Gene: CP00042G01590 (Carica papaya)
Overview 
- Gene Identifier
- CP00042G01590
- Transcript Identifier
- CP00042G01590.1
- Gene Type
- Coding gene
- Location
- supercontig_42 : 1569848-1582840 : positive
Family
- Gene family
- Duplication type
- Block duplicate
Descriptions
- Description (AnnoMine)
-
Ras-related protein Rab
Description of best ortholog(s):

Identifiers
Identifier | Name |
---|---|
pid | evm.TU.supercontig_42.159 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0007264 | IEA | Genome Project | small GTPase mediated signal transduction | |
GO:0006355 | IEA | Genome Project | regulation of transcription, DNA-dependent | |
GO:0015031 | IEA | Genome Project | protein transport | |
GO:0006184 | IEA | InterPro | GTP catabolic process | |
GO:0007165 | IEA | InterPro | signal transduction | |
GO:0006886 | IEA | InterPro | intracellular protein transport | |
GO:0006913 | IEA | InterPro | nucleocytoplasmic transport | |
GO:0009203 | IEA | PLAZA Homology | ribonucleoside triphosphate catabolic process | HOM03M000036 |
GO:0009205 | IEA | PLAZA Homology | purine ribonucleoside triphosphate metabolic process | HOM03M000036 |
GO:0009207 | IEA | PLAZA Homology | purine ribonucleoside triphosphate catabolic process | HOM03M000036 |
GO:0046128 | IEA | PLAZA Homology | purine ribonucleoside metabolic process | HOM03M000036 |
GO:0034641 | IEA | PLAZA Homology | cellular nitrogen compound metabolic process | HOM03M000036 |
GO:0006753 | IEA | PLAZA Homology | nucleoside phosphate metabolic process | HOM03M000036 |
GO:0046130 | IEA | PLAZA Homology | purine ribonucleoside catabolic process | HOM03M000036 |
GO:0006152 | IEA | PLAZA Homology | purine nucleoside catabolic process | HOM03M000036 |
GO:0042454 | IEA | PLAZA Homology | ribonucleoside catabolic process | HOM03M000036 |
GO:0051169 | IEA | PLAZA Homology | nuclear transport | HOM03M000036 |
GO:0046483 | IEA | PLAZA Homology | heterocycle metabolic process | HOM03M000036 |
GO:0033036 | IEA | PLAZA Homology | macromolecule localization | HOM03M000036 |
GO:0019439 | IEA | PLAZA Homology | aromatic compound catabolic process | HOM03M000036 |
GO:0046700 | IEA | PLAZA Homology | heterocycle catabolic process | HOM03M000036 |
GO:0009987 | IEA | PLAZA Homology | cellular process | HOM03M000036 |
GO:0023052 | IEA | PLAZA Homology | signaling | HOM03M000036 |
GO:1901292 | IEA | PLAZA Homology | nucleoside phosphate catabolic process | HOM03M000036 |
GO:0006139 | IEA | PLAZA Homology | nucleobase-containing compound metabolic process | HOM03M000036 |
GO:0019637 | IEA | PLAZA Homology | organophosphate metabolic process | HOM03M000036 |
GO:0051179 | IEA | PLAZA Homology | localization | HOM03M000036 |
GO:1901575 | IEA | PLAZA Homology | organic substance catabolic process | HOM03M000036 |
GO:0019693 | IEA | PLAZA Homology | ribose phosphate metabolic process | HOM03M000036 |
GO:0044763 | IEA | PLAZA Homology | single-organism cellular process | HOM03M000036 |
GO:1901069 | IEA | PLAZA Homology | guanosine-containing compound catabolic process | HOM03M000036 |
GO:1901068 | IEA | PLAZA Homology | guanosine-containing compound metabolic process | HOM03M000036 |
GO:0044281 | IEA | PLAZA Homology | small molecule metabolic process | HOM03M000036 |
GO:0051234 | IEA | PLAZA Homology | establishment of localization | HOM03M000036 |
GO:0009261 | IEA | PLAZA Homology | ribonucleotide catabolic process | HOM03M000036 |
GO:0042278 | IEA | PLAZA Homology | purine nucleoside metabolic process | HOM03M000036 |
GO:1901565 | IEA | PLAZA Homology | organonitrogen compound catabolic process | HOM03M000036 |
GO:1901564 | IEA | PLAZA Homology | organonitrogen compound metabolic process | HOM03M000036 |
GO:0070727 | IEA | PLAZA Homology | cellular macromolecule localization | HOM03M000036 |
GO:0009199 | IEA | PLAZA Homology | ribonucleoside triphosphate metabolic process | HOM03M000036 |
GO:0009056 | IEA | PLAZA Homology | catabolic process | HOM03M000036 |
GO:0055086 | IEA | PLAZA Homology | nucleobase-containing small molecule metabolic process | HOM03M000036 |
GO:0046907 | IEA | PLAZA Homology | intracellular transport | HOM03M000036 |
GO:1901360 | IEA | PLAZA Homology | organic cyclic compound metabolic process | HOM03M000036 |
GO:1901361 | IEA | PLAZA Homology | organic cyclic compound catabolic process | HOM03M000036 |
GO:0034655 | IEA | PLAZA Homology | nucleobase-containing compound catabolic process | HOM03M000036 |
GO:0050794 | IEA | PLAZA Homology | regulation of cellular process | HOM03M000036 |
GO:0072521 | IEA | PLAZA Homology | purine-containing compound metabolic process | HOM03M000036 |
GO:0008152 | IEA | PLAZA Homology | metabolic process | HOM03M000036 |
GO:0072523 | IEA | PLAZA Homology | purine-containing compound catabolic process | HOM03M000036 |
GO:0009116 | IEA | PLAZA Homology | nucleoside metabolic process | HOM03M000036 |
GO:0044700 | IEA | PLAZA Homology | single organism signaling | HOM03M000036 |
GO:0071704 | IEA | PLAZA Homology | organic substance metabolic process | HOM03M000036 |
GO:0009119 | IEA | PLAZA Homology | ribonucleoside metabolic process | HOM03M000036 |
GO:0071702 | IEA | PLAZA Homology | organic substance transport | HOM03M000036 |
GO:0009259 | IEA | PLAZA Homology | ribonucleotide metabolic process | HOM03M000036 |
GO:0006163 | IEA | PLAZA Homology | purine nucleotide metabolic process | HOM03M000036 |
GO:0009117 | IEA | PLAZA Homology | nucleotide metabolic process | HOM03M000036 |
GO:0006807 | IEA | PLAZA Homology | nitrogen compound metabolic process | HOM03M000036 |
GO:0051716 | IEA | PLAZA Homology | cellular response to stimulus | HOM03M000036 |
GO:0009146 | IEA | PLAZA Homology | purine nucleoside triphosphate catabolic process | HOM03M000036 |
GO:0009144 | IEA | PLAZA Homology | purine nucleoside triphosphate metabolic process | HOM03M000036 |
GO:0009143 | IEA | PLAZA Homology | nucleoside triphosphate catabolic process | HOM03M000036 |
GO:0006796 | IEA | PLAZA Homology | phosphate-containing compound metabolic process | HOM03M000036 |
GO:0009141 | IEA | PLAZA Homology | nucleoside triphosphate metabolic process | HOM03M000036 |
GO:0046434 | IEA | PLAZA Homology | organophosphate catabolic process | HOM03M000036 |
GO:0006793 | IEA | PLAZA Homology | phosphorus metabolic process | HOM03M000036 |
GO:0051641 | IEA | PLAZA Homology | cellular localization | HOM03M000036 |
GO:0006195 | IEA | PLAZA Homology | purine nucleotide catabolic process | HOM03M000036 |
GO:0044710 | IEA | PLAZA Homology | single-organism metabolic process | HOM03M000036 |
GO:0044712 | IEA | PLAZA Homology | single-organism catabolic process | HOM03M000036 |
GO:0050789 | IEA | PLAZA Homology | regulation of biological process | HOM03M000036 |
GO:0016482 | IEA | PLAZA Homology | cytoplasmic transport | HOM03M000036 |
GO:0006810 | IEA | PLAZA Homology | transport | HOM03M000036 |
GO:0051649 | IEA | PLAZA Homology | establishment of localization in cell | HOM03M000036 |
GO:0044270 | IEA | PLAZA Homology | cellular nitrogen compound catabolic process | HOM03M000036 |
GO:0065007 | IEA | PLAZA Homology | biological regulation | HOM03M000036 |
GO:1901657 | IEA | PLAZA Homology | glycosyl compound metabolic process | HOM03M000036 |
GO:1901658 | IEA | PLAZA Homology | glycosyl compound catabolic process | HOM03M000036 |
GO:0006725 | IEA | PLAZA Homology | cellular aromatic compound metabolic process | HOM03M000036 |
GO:0009166 | IEA | PLAZA Homology | nucleotide catabolic process | HOM03M000036 |
GO:0045184 | IEA | PLAZA Homology | establishment of protein localization | HOM03M000036 |
GO:0009164 | IEA | PLAZA Homology | nucleoside catabolic process | HOM03M000036 |
GO:0035556 | IEA | PLAZA Homology | intracellular signal transduction | HOM03M000036 |
GO:0008104 | IEA | PLAZA Homology | protein localization | HOM03M000036 |
GO:0007154 | IEA | PLAZA Homology | cell communication | HOM03M000036 |
GO:0046039 | IEA | PLAZA Homology | GTP metabolic process | HOM03M000036 |
GO:0044237 | IEA | PLAZA Homology | cellular metabolic process | HOM03M000036 |
GO:0044238 | IEA | PLAZA Homology | primary metabolic process | HOM03M000036 |
GO:0044699 | IEA | PLAZA Homology | single-organism process | HOM03M000036 |
GO:0009150 | IEA | PLAZA Homology | purine ribonucleotide metabolic process | HOM03M000036 |
GO:1901136 | IEA | PLAZA Homology | carbohydrate derivative catabolic process | HOM03M000036 |
GO:1901135 | IEA | PLAZA Homology | carbohydrate derivative metabolic process | HOM03M000036 |
GO:0009154 | IEA | PLAZA Homology | purine ribonucleotide catabolic process | HOM03M000036 |
GO:0034613 | IEA | PLAZA Homology | cellular protein localization | HOM03M000036 |
GO:0044248 | IEA | PLAZA Homology | cellular catabolic process | HOM03M000036 |
GO:0050896 | IEA | PLAZA Homology | response to stimulus | HOM03M000036 |
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005524 | IEA | Genome Project | ATP binding | |
GO:0005525 | IEA | Genome Project | GTP binding | |
GO:0008134 | IEA | Genome Project | transcription factor binding | |
GO:0003924 | IEA | InterPro | GTPase activity | |
GO:0016817 | IEA | PLAZA Homology | hydrolase activity, acting on acid anhydrides | HOM03M000036 |
GO:0043168 | IEA | PLAZA Homology | anion binding | HOM03M000036 |
GO:0043167 | IEA | PLAZA Homology | ion binding | HOM03M000036 |
GO:0035639 | IEA | PLAZA Homology | purine ribonucleoside triphosphate binding | HOM03M000036 |
GO:0016818 | IEA | PLAZA Homology | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | HOM03M000036 |
GO:0000166 | IEA | PLAZA Homology | nucleotide binding | HOM03M000036 |
GO:0036094 | IEA | PLAZA Homology | small molecule binding | HOM03M000036 |
GO:0001883 | IEA | PLAZA Homology | purine nucleoside binding | HOM03M000036 |
GO:0003824 | IEA | PLAZA Homology | catalytic activity | HOM03M000036 |
GO:1901265 | IEA | PLAZA Homology | nucleoside phosphate binding | HOM03M000036 |
GO:0097159 | IEA | PLAZA Homology | organic cyclic compound binding | HOM03M000036 |
GO:0019001 | IEA | PLAZA Homology | guanyl nucleotide binding | HOM03M000036 |
GO:1901363 | IEA | PLAZA Homology | heterocyclic compound binding | HOM03M000036 |
GO:0032555 | IEA | PLAZA Homology | purine ribonucleotide binding | HOM03M000036 |
GO:0032553 | IEA | PLAZA Homology | ribonucleotide binding | HOM03M000036 |
GO:0032561 | IEA | PLAZA Homology | guanyl ribonucleotide binding | HOM03M000036 |
GO:0097367 | IEA | PLAZA Homology | carbohydrate derivative binding | HOM03M000036 |
GO:0016462 | IEA | PLAZA Homology | pyrophosphatase activity | HOM03M000036 |
GO:0001882 | IEA | PLAZA Homology | nucleoside binding | HOM03M000036 |
GO:0017076 | IEA | PLAZA Homology | purine nucleotide binding | HOM03M000036 |
GO:0017111 | IEA | PLAZA Homology | nucleoside-triphosphatase activity | HOM03M000036 |
GO:0032549 | IEA | PLAZA Homology | ribonucleoside binding | HOM03M000036 |
GO:0016787 | IEA | PLAZA Homology | hydrolase activity | HOM03M000036 |
GO:0005488 | IEA | PLAZA Homology | binding | HOM03M000036 |
GO:0032550 | IEA | PLAZA Homology | purine ribonucleoside binding | HOM03M000036 |
Cellular Component
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005622 | IEA | Genome Project | intracellular | |
GO:0016020 | IEA | InterPro | membrane | |
GO:0005623 | IEA | PLAZA Homology | cell | HOM03M000036 |
GO:0044464 | IEA | PLAZA Homology | cell part | HOM03M000036 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
InterPro | Description |
---|---|
IPR001806 | Small GTPase superfamily |
IPR005225 | Small GTP-binding protein domain |
IPR002041 | Ran GTPase |
IPR024156 | Small GTPase superfamily, ARF type |
IPR003578 | Small GTPase superfamily, Rho type |
IPR003579 | Small GTPase superfamily, Rab type |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
IPR020849 | Small GTPase superfamily, Ras type |
No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.