PLAZA 3.0 Monocots gene overview : CP00042G01590

Gene: CP00042G01590 (Carica papaya)

Overview

Gene Identifier: CP00042G01590
Transcript Identifier: CP00042G01590.1
Gene Type: Coding gene
Location: supercontig_42 : 1569848-1582840 : positive

Family

Gene family: HOM03M000036
(959 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Ras-related protein Rab

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_42.159

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007264	IEA	Genome Project	small GTPase mediated signal transduction
GO:0006355	IEA	Genome Project	regulation of transcription, DNA-dependent
GO:0015031	IEA	Genome Project	protein transport
GO:0006184	IEA	InterPro	GTP catabolic process
GO:0007165	IEA	InterPro	signal transduction
GO:0006886	IEA	InterPro	intracellular protein transport
GO:0006913	IEA	InterPro	nucleocytoplasmic transport
GO:0009203	IEA	PLAZA Homology	ribonucleoside triphosphate catabolic process	HOM03M000036
GO:0009205	IEA	PLAZA Homology	purine ribonucleoside triphosphate metabolic process	HOM03M000036
GO:0009207	IEA	PLAZA Homology	purine ribonucleoside triphosphate catabolic process	HOM03M000036
GO:0046128	IEA	PLAZA Homology	purine ribonucleoside metabolic process	HOM03M000036
GO:0034641	IEA	PLAZA Homology	cellular nitrogen compound metabolic process	HOM03M000036
GO:0006753	IEA	PLAZA Homology	nucleoside phosphate metabolic process	HOM03M000036
GO:0046130	IEA	PLAZA Homology	purine ribonucleoside catabolic process	HOM03M000036
GO:0006152	IEA	PLAZA Homology	purine nucleoside catabolic process	HOM03M000036
GO:0042454	IEA	PLAZA Homology	ribonucleoside catabolic process	HOM03M000036
GO:0051169	IEA	PLAZA Homology	nuclear transport	HOM03M000036
GO:0046483	IEA	PLAZA Homology	heterocycle metabolic process	HOM03M000036
GO:0033036	IEA	PLAZA Homology	macromolecule localization	HOM03M000036
GO:0019439	IEA	PLAZA Homology	aromatic compound catabolic process	HOM03M000036
GO:0046700	IEA	PLAZA Homology	heterocycle catabolic process	HOM03M000036
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03M000036
GO:0023052	IEA	PLAZA Homology	signaling	HOM03M000036
GO:1901292	IEA	PLAZA Homology	nucleoside phosphate catabolic process	HOM03M000036
GO:0006139	IEA	PLAZA Homology	nucleobase-containing compound metabolic process	HOM03M000036
GO:0019637	IEA	PLAZA Homology	organophosphate metabolic process	HOM03M000036
GO:0051179	IEA	PLAZA Homology	localization	HOM03M000036
GO:1901575	IEA	PLAZA Homology	organic substance catabolic process	HOM03M000036
GO:0019693	IEA	PLAZA Homology	ribose phosphate metabolic process	HOM03M000036
GO:0044763	IEA	PLAZA Homology	single-organism cellular process	HOM03M000036
GO:1901069	IEA	PLAZA Homology	guanosine-containing compound catabolic process	HOM03M000036
GO:1901068	IEA	PLAZA Homology	guanosine-containing compound metabolic process	HOM03M000036
GO:0044281	IEA	PLAZA Homology	small molecule metabolic process	HOM03M000036
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03M000036
GO:0009261	IEA	PLAZA Homology	ribonucleotide catabolic process	HOM03M000036
GO:0042278	IEA	PLAZA Homology	purine nucleoside metabolic process	HOM03M000036
GO:1901565	IEA	PLAZA Homology	organonitrogen compound catabolic process	HOM03M000036
GO:1901564	IEA	PLAZA Homology	organonitrogen compound metabolic process	HOM03M000036
GO:0070727	IEA	PLAZA Homology	cellular macromolecule localization	HOM03M000036
GO:0009199	IEA	PLAZA Homology	ribonucleoside triphosphate metabolic process	HOM03M000036
GO:0009056	IEA	PLAZA Homology	catabolic process	HOM03M000036
GO:0055086	IEA	PLAZA Homology	nucleobase-containing small molecule metabolic process	HOM03M000036
GO:0046907	IEA	PLAZA Homology	intracellular transport	HOM03M000036
GO:1901360	IEA	PLAZA Homology	organic cyclic compound metabolic process	HOM03M000036
GO:1901361	IEA	PLAZA Homology	organic cyclic compound catabolic process	HOM03M000036
GO:0034655	IEA	PLAZA Homology	nucleobase-containing compound catabolic process	HOM03M000036
GO:0050794	IEA	PLAZA Homology	regulation of cellular process	HOM03M000036
GO:0072521	IEA	PLAZA Homology	purine-containing compound metabolic process	HOM03M000036
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000036
GO:0072523	IEA	PLAZA Homology	purine-containing compound catabolic process	HOM03M000036
GO:0009116	IEA	PLAZA Homology	nucleoside metabolic process	HOM03M000036
GO:0044700	IEA	PLAZA Homology	single organism signaling	HOM03M000036
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03M000036
GO:0009119	IEA	PLAZA Homology	ribonucleoside metabolic process	HOM03M000036
GO:0071702	IEA	PLAZA Homology	organic substance transport	HOM03M000036
GO:0009259	IEA	PLAZA Homology	ribonucleotide metabolic process	HOM03M000036
GO:0006163	IEA	PLAZA Homology	purine nucleotide metabolic process	HOM03M000036
GO:0009117	IEA	PLAZA Homology	nucleotide metabolic process	HOM03M000036
GO:0006807	IEA	PLAZA Homology	nitrogen compound metabolic process	HOM03M000036
GO:0051716	IEA	PLAZA Homology	cellular response to stimulus	HOM03M000036
GO:0009146	IEA	PLAZA Homology	purine nucleoside triphosphate catabolic process	HOM03M000036
GO:0009144	IEA	PLAZA Homology	purine nucleoside triphosphate metabolic process	HOM03M000036
GO:0009143	IEA	PLAZA Homology	nucleoside triphosphate catabolic process	HOM03M000036
GO:0006796	IEA	PLAZA Homology	phosphate-containing compound metabolic process	HOM03M000036
GO:0009141	IEA	PLAZA Homology	nucleoside triphosphate metabolic process	HOM03M000036
GO:0046434	IEA	PLAZA Homology	organophosphate catabolic process	HOM03M000036
GO:0006793	IEA	PLAZA Homology	phosphorus metabolic process	HOM03M000036
GO:0051641	IEA	PLAZA Homology	cellular localization	HOM03M000036
GO:0006195	IEA	PLAZA Homology	purine nucleotide catabolic process	HOM03M000036
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000036
GO:0044712	IEA	PLAZA Homology	single-organism catabolic process	HOM03M000036
GO:0050789	IEA	PLAZA Homology	regulation of biological process	HOM03M000036
GO:0016482	IEA	PLAZA Homology	cytoplasmic transport	HOM03M000036
GO:0006810	IEA	PLAZA Homology	transport	HOM03M000036
GO:0051649	IEA	PLAZA Homology	establishment of localization in cell	HOM03M000036
GO:0044270	IEA	PLAZA Homology	cellular nitrogen compound catabolic process	HOM03M000036
GO:0065007	IEA	PLAZA Homology	biological regulation	HOM03M000036
GO:1901657	IEA	PLAZA Homology	glycosyl compound metabolic process	HOM03M000036
GO:1901658	IEA	PLAZA Homology	glycosyl compound catabolic process	HOM03M000036
GO:0006725	IEA	PLAZA Homology	cellular aromatic compound metabolic process	HOM03M000036
GO:0009166	IEA	PLAZA Homology	nucleotide catabolic process	HOM03M000036
GO:0045184	IEA	PLAZA Homology	establishment of protein localization	HOM03M000036
GO:0009164	IEA	PLAZA Homology	nucleoside catabolic process	HOM03M000036
GO:0035556	IEA	PLAZA Homology	intracellular signal transduction	HOM03M000036
GO:0008104	IEA	PLAZA Homology	protein localization	HOM03M000036
GO:0007154	IEA	PLAZA Homology	cell communication	HOM03M000036
GO:0046039	IEA	PLAZA Homology	GTP metabolic process	HOM03M000036
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03M000036
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000036
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000036
GO:0009150	IEA	PLAZA Homology	purine ribonucleotide metabolic process	HOM03M000036
GO:1901136	IEA	PLAZA Homology	carbohydrate derivative catabolic process	HOM03M000036
GO:1901135	IEA	PLAZA Homology	carbohydrate derivative metabolic process	HOM03M000036
GO:0009154	IEA	PLAZA Homology	purine ribonucleotide catabolic process	HOM03M000036
GO:0034613	IEA	PLAZA Homology	cellular protein localization	HOM03M000036
GO:0044248	IEA	PLAZA Homology	cellular catabolic process	HOM03M000036
GO:0050896	IEA	PLAZA Homology	response to stimulus	HOM03M000036

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	Genome Project	ATP binding
GO:0005525	IEA	Genome Project	GTP binding
GO:0008134	IEA	Genome Project	transcription factor binding
GO:0003924	IEA	InterPro	GTPase activity
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03M000036
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000036
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000036
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000036
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03M000036
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03M000036
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000036
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000036
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000036
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000036
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000036
GO:0019001	IEA	PLAZA Homology	guanyl nucleotide binding	HOM03M000036
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000036
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000036
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000036
GO:0032561	IEA	PLAZA Homology	guanyl ribonucleotide binding	HOM03M000036
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000036
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03M000036
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000036
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000036
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03M000036
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000036
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000036
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000036
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000036

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005622	IEA	Genome Project	intracellular
GO:0016020	IEA	InterPro	membrane
GO:0005623	IEA	PLAZA Homology	cell	HOM03M000036
GO:0044464	IEA	PLAZA Homology	cell part	HOM03M000036

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001806	Small GTPase superfamily
IPR005225	Small GTP-binding protein domain
IPR002041	Ran GTPase
IPR024156	Small GTPase superfamily, ARF type
IPR003578	Small GTPase superfamily, Rho type
IPR003579	Small GTPase superfamily, Rab type
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR020849	Small GTPase superfamily, Ras type

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.