PLAZA 3.0 Monocots gene overview : CP00035G00560

Gene: CP00035G00560 (Carica papaya)

Overview

Gene Identifier: CP00035G00560
Transcript Identifier: CP00035G00560.1
Gene Type: Coding gene
Location: supercontig_35 : 1327674-1333634 : negative

Family

Gene family: HOM03M000928
(76 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine): tryptophan--pyruvate aminotransferase 1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_35.56

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0042742	ISO	PLAZA Integrative Orthology	defense response to bacterium	AT4G24670
GO:0080022	ISO	PLAZA Integrative Orthology	primary root development	AT4G24670
GO:0048825	ISO	PLAZA Integrative Orthology	cotyledon development	AT4G24670
GO:0048467	ISO	PLAZA Integrative Orthology	gynoecium development	AT4G24670
GO:0048367	ISO	PLAZA Integrative Orthology	shoot system development	AT4G24670
GO:0010588	ISO	PLAZA Integrative Orthology	cotyledon vascular tissue pattern formation	AT4G24670
GO:0010087	ISO	PLAZA Integrative Orthology	phloem or xylem histogenesis	AT4G24670
GO:0010078	ISO	PLAZA Integrative Orthology	maintenance of root meristem identity	AT4G24670
GO:0009958	ISO	PLAZA Integrative Orthology	positive gravitropism	AT4G24670
GO:0009908	ISO	PLAZA Integrative Orthology	flower development	AT4G24670
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT4G24670
GO:0009723	ISO	PLAZA Integrative Orthology	response to ethylene	AT4G24670
GO:0009684	ISO	PLAZA Integrative Orthology	indoleacetic acid biosynthetic process	AT4G24670

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016846	IEA	Genome Project	carbon-sulfur lyase activity
GO:0003824	IEA	Genome Project	catalytic activity
GO:0030170	IEA	Genome Project	pyridoxal phosphate binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR015424	Pyridoxal phosphate-dependent transferase
IPR006948	Allinase, C-terminal
IPR015422	Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR006947	EGF-like, alliinase

No MapMan annotations defined for this gene.

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network