PLAZA 3.0 Monocots gene overview : CP00031G00490

Gene: CP00031G00490 (Carica papaya)

Overview

Gene Identifier: CP00031G00490
Transcript Identifier: CP00031G00490.1
Gene Type: Coding gene
Location: supercontig_31 : 941857-967481 : negative

Family

Gene family: HOM03M000534
(122 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Probable Werner syndrome ATP-dependent helicase homolog 1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_31.49

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006281	IEA	Genome Project	DNA repair
GO:0006260	IEA	Genome Project	DNA replication
GO:0006310	IEA	Genome Project	DNA recombination
GO:0070417	ISO	PLAZA Integrative Orthology	cellular response to cold	AT1G10930 AT1G60930
GO:0071215	ISO	PLAZA Integrative Orthology	cellular response to abscisic acid stimulus	AT1G10930
GO:0000723	ISO	PLAZA Integrative Orthology	telomere maintenance	AT1G10930
GO:0000724	ISO	PLAZA Integrative Orthology	double-strand break repair via homologous recombination	AT1G10930
GO:0006974	ISO	PLAZA Integrative Orthology	cellular response to DNA damage stimulus	AT1G10930
GO:0051276	ISO	PLAZA Integrative Orthology	chromosome organization	AT1G10930

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	Genome Project	ATP binding
GO:0043140	IEA	Genome Project	ATP-dependent 3'-5' DNA helicase activity
GO:0004386	IEA	Genome Project	helicase activity
GO:0003676	IEA	Genome Project	nucleic acid binding
GO:0008026	IEA	Genome Project	ATP-dependent helicase activity
GO:0043138	ISO	PLAZA Integrative Orthology	3'-5' DNA helicase activity	AT1G10930
GO:0070035	IEA	PLAZA Homology	purine NTP-dependent helicase activity	HOM03M000534

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT1G10930

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR004589	DNA helicase, ATP-dependent, RecQ type
IPR001650	Helicase, C-terminal
IPR018982	RQC domain
IPR011991	Winged helix-turn-helix DNA-binding domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.