PLAZA 3.0 Monocots gene overview : CP00017G01710

Gene: CP00017G01710 (Carica papaya)

Overview

Gene Identifier: CP00017G01710
Transcript Identifier: CP00017G01710.1
Gene Type: Coding gene
Location: supercontig_17 : 2285161-2287727 : positive

Family

Gene family: HOM03M000029
(1065 genes in 15 species)
specific family
Subfamily: ORTHO03M000480
(14 genes in 9 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): Probable peptide/nitrate transporter At1g18880

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_17.171

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006857	IEA	Genome Project	oligopeptide transport
GO:0006810	IEA	InterPro	transport
GO:0090449	ISO	PLAZA Integrative Orthology	phloem glucosinolate loading	AT3G47960
GO:1901349	ISO	PLAZA Integrative Orthology	glucosinolate transport	AT3G47960
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03M000029
GO:0051179	IEA	PLAZA Homology	localization	HOM03M000029

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	IEA	Genome Project	transporter activity
GO:0090448	ISO	PLAZA Integrative Orthology	glucosinolate:hydrogen symporter activity	AT3G47960

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	IEA	Genome Project	membrane
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT3G47960
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT3G47960
GO:0005794	ISO	PLAZA Integrative Orthology	Golgi apparatus	AT3G47960

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000109	Proton-dependent oligopeptide transporter family
IPR016196	Major facilitator superfamily domain, general substrate transporter

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.