Gene: CP00007G00800 (Carica papaya)

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Gene Identifier
CP00007G00800
Transcript Identifier
CP00007G00800.1
Gene Type
Coding gene
Location
supercontig_7 : 771768-775759 : negative

Family

Gene family
HOM03M000661
(104 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
116 kDa U5 small nuclear ribonucleoprotein component
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_7.80

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT1G06220
GO:0045694ISOPLAZA Integrative Orthologyregulation of embryo sac egg cell differentiationAT1G06220
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT1G56070

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005525IEAGenome ProjectGTP binding
GO:0003924IEAGenome ProjectGTPase activity
GO:0005507ISOPLAZA Integrative Orthologycopper ion bindingAT1G56070

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005618ISOPLAZA Integrative Orthologycell wallAT1G06220
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT1G06220 AT1G56070
GO:0016607ISOPLAZA Integrative Orthologynuclear speckAT1G06220
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT1G56070 AT5G25230
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT1G56070
GO:0016020ISOPLAZA Integrative OrthologymembraneAT1G56070
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT1G56070
GO:0005829ISOPLAZA Integrative OrthologycytosolAT1G56070
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT1G56070 AT5G25230
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT1G56070

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009022Elongation factor G, III-V domain
IPR005225Small GTP-binding protein domain
IPR000640Translation elongation factor EFG, V domain
IPR000795Elongation factor, GTP-binding domain
IPR005517Translation elongation factor EFG/EF2, domain IV
IPR020568Ribosomal protein S5 domain 2-type fold
IPR004161Translation elongation factor EFTu/EF1A, domain 2
IPR009000Translation protein, beta-barrel domain
IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
IPR027417P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.