PLAZA 3.0 Monocots gene overview : CP00006G03920

Gene: CP00006G03920 (Carica papaya)

Overview

Gene Identifier: CP00006G03920
Transcript Identifier: CP00006G03920.1
Gene Type: Coding gene
Location: supercontig_6 : 3037310-3040662 : positive

Family

Gene family: HOM03M000056
(721 genes in 16 species)
specific family
Subfamily: ORTHO03M000064
(41 genes in 13 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description (AnnoMine): Monocopper oxidase-like protein SKU5

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_6.393

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0080167	ISO	PLAZA Integrative Orthology	response to karrikin	AT5G66920
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000056
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000056

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005507	IEA	Genome Project	copper ion binding
GO:0016491	IEA	Genome Project	oxidoreductase activity
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03M000056
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000056
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03M000056
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000056
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03M000056

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005618	ISO	PLAZA Integrative Orthology	cell wall	AT5G66920
GO:0009505	ISO	PLAZA Integrative Orthology	plant-type cell wall	AT5G66920
GO:0005576	IEA	PLAZA Homology	extracellular region	HOM03M000056

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR008972	Cupredoxin
IPR011707	Multicopper oxidase, type 3
IPR011706	Multicopper oxidase, type 2
IPR001117	Multicopper oxidase, type 1

No MapMan annotations defined for this gene.

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network