PLAZA 3.0 Monocots gene overview : CP00005G02030

Gene: CP00005G02030 (Carica papaya)

Overview

Gene Identifier: CP00005G02030
Transcript Identifier: CP00005G02030.1
Gene Type: Coding gene
Location: supercontig_5 : 1793739-1800247 : positive

Family

Gene family: HOM03M000527
(112 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Cystathionine beta-lyase, chloroplastic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_5.203

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006520	IEA	Genome Project	cellular amino acid metabolic process
GO:0071266	IEA	InterPro	'de novo' L-methionine biosynthetic process
GO:0019279	ISO	PLAZA Integrative Orthology	L-methionine biosynthetic process from L-homoserine via cystathionine	AT3G57050

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003824	IEA	Genome Project	catalytic activity
GO:0030170	IEA	Genome Project	pyridoxal phosphate binding
GO:0004121	IEA	InterPro	cystathionine beta-lyase activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	AT3G57050
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT3G57050

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000277	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
IPR006238	Cystathionine beta-lyase, eukaryotic
IPR015422	Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR015424	Pyridoxal phosphate-dependent transferase
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.