PLAZA 3.0 Monocots gene overview : CP00002G02840

Gene: CP00002G02840 (Carica papaya)

Overview

Gene Identifier: CP00002G02840
Transcript Identifier: CP00002G02840.1
Gene Type: Coding gene
Location: supercontig_2 : 3641727-3644205 : negative

Family

Gene family: HOM03M001026
(71 genes in 16 species)
specific family
Subfamily: ORTHO03M005017
(7 genes in 7 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): 3.2, mitochondrial

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_2.284

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006801	IEA	Genome Project	superoxide metabolic process
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0019430	ISO	PLAZA Integrative Orthology	removal of superoxide radicals	AT3G10920
GO:0010043	ISO	PLAZA Integrative Orthology	response to zinc ion	AT3G10920
GO:0009651	ISO	PLAZA Integrative Orthology	response to salt stress	AT3G10920
GO:0042742	ISO	PLAZA Integrative Orthology	defense response to bacterium	AT3G10920
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT3G10920

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004784	IEA	Genome Project	superoxide dismutase activity
GO:0046872	IEA	Genome Project	metal ion binding
GO:0005507	ISO	PLAZA Integrative Orthology	copper ion binding	AT3G10920
GO:0016721	IEA	PLAZA Homology	oxidoreductase activity, acting on superoxide radicals as acceptor	HOM03M001026

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT3G10920

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001189	Manganese/iron superoxide dismutase
IPR019831	Manganese/iron superoxide dismutase, N-terminal
IPR019833	Manganese/iron superoxide dismutase, binding site
IPR019832	Manganese/iron superoxide dismutase, C-terminal

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.