Gene: CP00002G01090 (Carica papaya)

Overview top

Gene Identifier
CP00002G01090
Transcript Identifier
CP00002G01090.1
Gene Type
Coding gene
Location
supercontig_2 : 1834542-1836842 : negative

Family

Gene family
HOM03M000147
(323 genes in 14 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
finger protein JACKDAW
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidevm.TU.supercontig_2.109

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009959ISOPLAZA Integrative Orthologynegative gravitropismAT2G01940
GO:0009958ISOPLAZA Integrative Orthologypositive gravitropismAT2G01940
GO:2000904ISOPLAZA Integrative Orthologyregulation of starch metabolic processAT2G01940 AT1G68130
GO:0010031ISOPLAZA Integrative OrthologycircumnutationAT2G01940
GO:0009590ISOPLAZA Integrative Orthologydetection of gravityAT2G01940
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT2G01940 AT1G68130 AT1G25250

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEAGenome Projectzinc ion binding
GO:0003676IEAInterPronucleic acid binding
GO:0046872IEAInterPrometal ion binding
GO:0046982ISOPLAZA Integrative Orthologyprotein heterodimerization activityAT1G68130
GO:0044212ISOPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT1G68130
GO:0043621ISOPLAZA Integrative Orthologyprotein self-associationAT1G68130

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAGenome Projectintracellular
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G01940 AT1G68130

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
IPR019786Zinc finger, PHD-type, conserved site
IPR007087Zinc finger, C2H2
IPR015880Zinc finger, C2H2-like

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBC2H2