PLAZA 3.0 Monocots gene overview : CP00001G03680

Gene: CP00001G03680 (Carica papaya)

Overview

Gene Identifier: CP00001G03680
Transcript Identifier: CP00001G03680.1
Gene Type: Coding gene
Location: supercontig_1 : 4830074-4830862 : positive

Family

Gene family: HOM03M000074
(603 genes in 14 species)
specific family
Subfamily: ORTHO03M009549
(4 genes in 3 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): Probable glutathione S-transferase GSTU6

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_1.368

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009407	ISO	PLAZA Integrative Orthology	toxin catabolic process	AT1G10360 AT1G10370 AT1G27130 AT1G27140 AT1G59670 AT1G69920 AT1G69930
GO:0080167	ISO	PLAZA Integrative Orthology	response to karrikin	AT1G10370
GO:0006749	ISO	PLAZA Integrative Orthology	glutathione metabolic process	AT1G10370 AT1G27140 AT1G69920
GO:0009704	ISO	PLAZA Integrative Orthology	de-etiolation	AT1G10370
GO:0048527	ISO	PLAZA Integrative Orthology	lateral root development	AT1G10370
GO:0060416	ISO	PLAZA Integrative Orthology	response to growth hormone	AT1G10370
GO:0009651	ISO	PLAZA Integrative Orthology	response to salt stress	AT1G10370
GO:0080148	ISO	PLAZA Integrative Orthology	negative regulation of response to water deprivation	AT1G10370
GO:0046686	ISO	PLAZA Integrative Orthology	response to cadmium ion	AT1G27130

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0004364	ISO	PLAZA Integrative Orthology	glutathione transferase activity	AT1G10370 AT1G27140 AT1G69920

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT1G10370

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012336	Thioredoxin-like fold
IPR004045	Glutathione S-transferase, N-terminal
IPR004046	Glutathione S-transferase, C-terminal
IPR010987	Glutathione S-transferase, C-terminal-like

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.