PLAZA 3.0 Monocots gene overview : CP00001G02560

Gene: CP00001G02560 (Carica papaya)

Overview

Gene Identifier: CP00001G02560
Transcript Identifier: CP00001G02560.1
Gene Type: Coding gene
Location: supercontig_1 : 3727785-3729705 : negative

Family

Gene family: HOM03M000068
(644 genes in 16 species)
specific family
Subfamily: ORTHO03M009136
(5 genes in 5 species)
specific family

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Descriptions

Description (AnnoMine): ribonucleoprotein A1, A2/B1 homolog

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	evm.TU.supercontig_1.256

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010029	ISO	PLAZA Integrative Orthology	regulation of seed germination	AT3G54770
GO:0009737	ISO	PLAZA Integrative Orthology	response to abscisic acid	AT3G54770
GO:0009651	ISO	PLAZA Integrative Orthology	response to salt stress	AT3G54770
GO:0009414	ISO	PLAZA Integrative Orthology	response to water deprivation	AT3G54770

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	Genome Project	nucleotide binding
GO:0003676	IEA	Genome Project	nucleic acid binding
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000068
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000068
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000068
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000068

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G54770

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR012677	Nucleotide-binding, alpha-beta plait
IPR000504	RNA recognition motif domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.