Gene: BD3G57667 (Brachypodium distachyon)

Overview top

Gene Identifier
BD3G57667
Transcript Identifier
BD3G57667.1
Gene Type
Coding gene
Location
Bd3 : 57354772-57360506 : positive

Family

Gene family
HOM03M000659
(104 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
protein ligase COP1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameBradi3g57667
RNAnameBradi3g57667.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009641ISOPLAZA Integrative Orthologyshade avoidanceAT2G32950
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G32950
GO:0006281ISOPLAZA Integrative OrthologyDNA repairAT2G32950
GO:0048573ISOPLAZA Integrative Orthologyphotoperiodism, floweringAT2G32950
GO:0046283ISOPLAZA Integrative Orthologyanthocyanin-containing compound metabolic processAT2G32950
GO:0010119ISOPLAZA Integrative Orthologyregulation of stomatal movementAT2G32950
GO:0009647ISOPLAZA Integrative OrthologyskotomorphogenesisAT2G32950
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT2G32950

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0046872IEAInterPrometal ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT2G32950
GO:0043167IEAPLAZA Homologyion bindingHOM03M000659

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G32950
GO:0000152ISOPLAZA Integrative Orthologynuclear ubiquitin ligase complexAT2G32950
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G32950

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001680WD40 repeat
IPR001841Zinc finger, RING-type
IPR017986WD40-repeat-containing domain
IPR015943WD40/YVTN repeat-like-containing domain
IPR017907Zinc finger, RING-type, conserved site
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019775WD40 repeat, conserved site
IPR018957Zinc finger, C3HC4 RING-type

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.