Gene: AT5G67320 (Arabidopsis thaliana)

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Gene Identifier
AT5G67320
Transcript Identifier
AT5G67320.1
Gene Type
Coding gene
Location
5 : 26857268-26860974 : positive

Family

Gene family
HOM03M001778
(44 genes in 16 species)
specific family

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Descriptions

Description
WD-40 repeat family protein
Curated Summary
Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing.
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Identifiers

Identifier Name
aliashigh expression of osmotically responsive genes 15
aliasHOS15

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009409IMPGene Ontologyresponse to cold1
GO:0016575IMPGene Ontologyhistone deacetylation1
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0016572RCAGene Ontologyhistone phosphorylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0005834ISSGene Ontologyheterotrimeric G-protein complex1
GO:0080008ISSGene OntologyCul4-RING ubiquitin ligase complex1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001680WD40 repeat
IPR019775WD40 repeat, conserved site
IPR015943WD40/YVTN repeat-like-containing domain
IPR020472G-protein beta WD-40 repeat
IPR006594LisH dimerisation motif
IPR017986WD40-repeat-containing domain
IPR013720LisH dimerisation motif, subgroup

Mapman id Description
20.2.2stress.abiotic.cold
27.3.55RNA.regulation of transcription.HDA
No SignalP domains detected for this gene.