Gene: AT5G64200 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G64200
Transcript Identifier
AT5G64200.1
Gene Type
Coding gene
Location
5 : 25681849-25683553 : negative

Family

Gene family
HOM03M000574
(116 genes in 16 species)
specific family

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Descriptions

Description
ortholog of human splicing factor SC35
Curated Summary
encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.
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Identifiers

Identifier Name
aliasSC35
aliasATSC35
aliasortholog of human splicing factor SC35
aliasAt-SC35
aliasARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000398RCA, TASGene OntologymRNA splicing, via spliceosome1 2
GO:0008380NASGene OntologyRNA splicing1
GO:0030422RCAGene Ontologyproduction of siRNA involved in RNA interference1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISSGene OntologyRNA binding1
GO:0000166IEAInterPronucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M000574

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0016607IDAGene Ontologynuclear speck1
GO:0016020IDAGene Ontologymembrane1
GO:0005829IDAGene Ontologycytosol1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR003954RNA recognition motif domain, eukaryote
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
27.1.1RNA.processing.splicing
No SignalP domains detected for this gene.