Gene: AT5G63960 (Arabidopsis thaliana)

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Gene Identifier
AT5G63960
Transcript Identifier
AT5G63960.2
Gene Type
Coding gene
Location
5 : 25599597-25606672 : positive

Family

Gene family
HOM03M001667
(47 genes in 16 species)
specific family

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Descriptions

Description
DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases
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Identifiers

Identifier Name
uniprotQ9LVN7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006287IBAGene Ontologybase-excision repair, gap-filling1
GO:0006297IBAGene Ontologynucleotide-excision repair, DNA gap filling1
GO:0007346IBAGene Ontologyregulation of mitotic cell cycle1
GO:0043137IBAGene OntologyDNA replication, removal of RNA primer1
GO:0045004IBAGene OntologyDNA replication proofreading1
GO:0090305IEA, IBAUniProtnucleic acid phosphodiester bond hydrolysis1 2 3
GO:0000724RCAGene Ontologydouble-strand break repair via homologous recombination1
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0006260IEA, RCAUniProtDNA replication1 2 3
GO:0006261RCAGene OntologyDNA-dependent DNA replication1
GO:0006275RCAGene Ontologyregulation of DNA replication1
GO:0006302RCAGene Ontologydouble-strand break repair1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006310RCAGene OntologyDNA recombination1
GO:0006312RCAGene Ontologymitotic recombination1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0007062RCAGene Ontologysister chromatid cohesion1
GO:0007067RCAGene Ontologymitosis1
GO:0007126RCAGene Ontologymeiosis1
GO:0007129RCAGene Ontologysynapsis1
GO:0007131RCAGene Ontologyreciprocal meiotic recombination1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0008283RCAGene Ontologycell proliferation1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0010332RCAGene Ontologyresponse to gamma radiation1
GO:0010389RCAGene Ontologyregulation of G2/M transition of mitotic cell cycle1
GO:0010564RCAGene Ontologyregulation of cell cycle process1
GO:0016246RCAGene OntologyRNA interference1
GO:0016458RCAGene Ontologygene silencing1
GO:0016570RCAGene Ontologyhistone modification1
GO:0031047RCAGene Ontologygene silencing by RNA1
GO:0031048RCAGene Ontologychromatin silencing by small RNA1
GO:0032204RCAGene Ontologyregulation of telomere maintenance1
GO:0034968RCAGene Ontologyhistone lysine methylation1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0042138RCAGene Ontologymeiotic DNA double-strand break formation1
GO:0043247RCAGene Ontologytelomere maintenance in response to DNA damage1
GO:0045132RCAGene Ontologymeiotic chromosome segregation1
GO:0048449RCAGene Ontologyfloral organ formation1
GO:0048451RCAGene Ontologypetal formation1
GO:0048453RCAGene Ontologysepal formation1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1
GO:0006139IEAInterPronucleobase-containing compound metabolic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003887IEA, IBA, ISSUniProtDNA-directed DNA polymerase activity1 2 3 4
GO:0008296IBAGene Ontology3'-5'-exodeoxyribonuclease activity1
GO:0051539IEAUniProt4 iron, 4 sulfur cluster binding1 2
GO:0003677IEAUniProtDNA binding1 2
GO:0004527IEAUniProtexonuclease activity1 2
GO:0046872IEAUniProtmetal ion binding1 2
GO:0000166IEAUniProtnucleotide binding1 2
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03M001667

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3
GO:0043625IBAGene Ontologydelta DNA polymerase complex1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR017964DNA-directed DNA polymerase, family B, conserved site
IPR025687C4-type zinc-finger of DNA polymerase delta
IPR006133DNA-directed DNA polymerase, family B, exonuclease domain
IPR023211DNA polymerase, palm domain
IPR012337Ribonuclease H-like domain
IPR006172DNA-directed DNA polymerase, family B
IPR006134DNA-directed DNA polymerase, family B, multifunctional domain
IPR004578DNA-directed DNA polymerase, family B, pol2

Mapman id Description
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.