Gene: AT5G62540 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G62540
Transcript Identifier
AT5G62540.1
Gene Type
Coding gene
Location
5 : 25104679-25105465 : positive

Family

Gene family
HOM03M000077
(598 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
ubiquitin-conjugating enzyme 3
Curated Summary
Encodes a protein predicted to be an E2 ubiquitin conjugating enzyme. It appears homologous to the RAD6 protein in yeast implicated in histone ubiquitination, but, UBC3 has not been experimentally associated with this process.
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Identifiers

Identifier Name
aliasUBC3
aliasubiquitin-conjugating enzyme 3
uniprotP42746

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511IDA, TAS, UniProtubiquitin-dependent protein catabolic process1 2 3 4 5 6 7
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842IDA, ISS, UniProtubiquitin-protein ligase activity1 2 3 4 5 6 7
GO:0005524IEAUniProtATP binding1 2 3 4 5
GO:0016881IEAInterProacid-amino acid ligase activity
GO:0016874IEAPLAZA Homologyligase activityHOM03M000077
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03M000077
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M000077

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000608Ubiquitin-conjugating enzyme, E2
IPR016135Ubiquitin-conjugating enzyme/RWD-like
IPR023313Ubiquitin-conjugating enzyme, active site

Mapman id Description
29.5.11.3protein.degradation.ubiquitin.E2
No SignalP domains detected for this gene.