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WorkbenchGene: AT5G61380 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT5G61380
- Transcript Identifier
- AT5G61380.1
- Gene Type
- Coding gene
- Location
- 5 : 24675540-24678176 : positive
Family
- Gene family
Descriptions
- Description
-
CCT motif -containing response regulator protein
- Curated Summary
-
Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.
Identifiers
| Identifier | Name |
|---|---|
| alias | APRR1 |
| alias | PSEUDO-RESPONSE REGULATOR 1 |
| alias | TOC1 |
| alias | PRR1 |
| alias | AtTOC1 |
| alias | TIMING OF CAB EXPRESSION 1 |
| uniprot | Q9LKL2 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006355 | ISS, TAS, IEA | Gene Ontology | regulation of transcription, DNA-dependent | 1 2 |
| GO:0007623 | IEP, RCATAS, | UniProt | circadian rhythm | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
| GO:0010031 | IMP | UniProt | circumnutation | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
| GO:0006351 | TAS | UniProt | transcription, DNA-templated | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
| GO:0010629 | IDA | UniProt | negative regulation of gene expression | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
| GO:0009639 | RCA | Gene Ontology | response to red or far red light | 1 |
| GO:0042752 | RCA | Gene Ontology | regulation of circadian rhythm | 1 |
| GO:0048574 | RCA | Gene Ontology | long-day photoperiodism, flowering | 1 |
| GO:0009908 | IEA | UniProt | flower development | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
| GO:0035556 | IEA | UniProt | intracellular signal transduction | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
| GO:0000160 | IEA | InterPro | phosphorelay signal transduction system | |
| GO:2001141 | IEA | PLAZA Homology | regulation of RNA biosynthetic process | HOM03M000944 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0000156 | IEA, ISS | UniProt | phosphorelay response regulator activity | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
| GO:0005515 | IPI, IEA | Gene Ontology | protein binding | 1 |
| GO:0044212 | IDA | Gene Ontology | transcription regulatory region DNA binding | 1 |
| GO:0003677 | IDA | UniProt | DNA binding | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
| GO:0003700 | IDA | UniProt | sequence-specific DNA binding transcription factor activity | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005634 | TAS, IDA, ISM | UniProt | nucleus | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.3.66 | RNA.regulation of transcription.Psudo ARR transcription factor family |
No SignalP domains detected for this gene.
| Database | Type |
|---|---|
| PlnTFDB | Pseudo ARR-B |