Gene: AT5G61380 (Arabidopsis thaliana)

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Gene Identifier
AT5G61380
Transcript Identifier
AT5G61380.1
Gene Type
Coding gene
Location
5 : 24675540-24678176 : positive

Family

Gene family
HOM03M000944
(75 genes in 15 species)
specific family

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Descriptions

Description
CCT motif -containing response regulator protein
Curated Summary
Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.
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Identifiers

Identifier Name
aliasAPRR1
aliasPSEUDO-RESPONSE REGULATOR 1
aliasTOC1
aliasPRR1
aliasAtTOC1
aliasTIMING OF CAB EXPRESSION 1
uniprotQ9LKL2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISS, TAS, IEAGene Ontologyregulation of transcription, DNA-dependent1 2
GO:0007623IEP, RCATAS, UniProtcircadian rhythm1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
GO:0010031IMPUniProtcircumnutation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0006351TASUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0010629IDAUniProtnegative regulation of gene expression1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0009639RCAGene Ontologyresponse to red or far red light1
GO:0042752RCAGene Ontologyregulation of circadian rhythm1
GO:0048574RCAGene Ontologylong-day photoperiodism, flowering1
GO:0009908IEAUniProtflower development1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0035556IEAUniProtintracellular signal transduction1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0000160IEAInterProphosphorelay signal transduction system
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000944

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000156IEA, ISSUniProtphosphorelay response regulator activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0044212IDAGene Ontologytranscription regulatory region DNA binding1
GO:0003677IDAUniProtDNA binding1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16
GO:0003700IDAUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634TAS, IDA, ISMUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011006CheY-like superfamily
IPR010402CCT domain
IPR001789Signal transduction response regulator, receiver domain

Mapman id Description
27.3.66RNA.regulation of transcription.Psudo ARR transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPseudo ARR-B