PLAZA 3.0 Monocots gene overview : AT5G59030

Gene: AT5G59030 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G59030
Transcript Identifier: AT5G59030.1
Gene Type: Coding gene
Location: 5 : 23833945-23834457 : negative

Family

Gene family: HOM03M001511
(51 genes in 13 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: copper transporter 1

Curated Summary: encodes a putative copper transport protein that contains copper-binding motif and functionally complements in copper-transport defective yeast strains

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Identifiers

Identifier	Name
alias	COPT1
alias	copper transporter 1
uniprot	Q39065

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006825	IGI, ISS	Gene Ontology	copper ion transport	1 2
GO:0048235	IMP	UniProt	pollen sperm cell differentiation	1 2 3 4 5 6
GO:0048364	IMP	UniProt	root development	1 2 3 4 5 6
GO:0035434	IEA	InterPro	copper ion transmembrane transport

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005375	IGI, ISSIEA,	UniProt	copper ion transmembrane transporter activity	1 2 3 4 5 6 7
GO:0043621	ISO	PLAZA Integrative Orthology	protein self-association	OS05G35050 OS01G56420

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	ISS	UniProt	membrane	1 2 3 4 5 6
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR007274	Ctr copper transporter

Mapman id	Description
34.12	transport.metal

No SignalP domains detected for this gene.