Gene: AT5G56130 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G56130
Transcript Identifier
AT5G56130.1
Gene Type
Coding gene
Location
5 : 22722755-22725065 : negative

Family

Gene family
HOM03M005073
(19 genes in 16 species)
specific family
Subfamily
ORTHO03M006606
(6 genes in 6 species)
specific family

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Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
Curated Summary
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
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Identifiers

Identifier Name
aliasTHO3
aliasTEX1
aliasAtTEX1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010267IMPGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0031047IMPGene Ontologygene silencing by RNA1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166ISSGene Ontologynucleotide binding1
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0080008ISSGene OntologyCul4-RING ubiquitin ligase complex1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001680WD40 repeat
IPR020472G-protein beta WD-40 repeat
IPR017986WD40-repeat-containing domain
IPR019775WD40 repeat, conserved site
IPR015943WD40/YVTN repeat-like-containing domain

Mapman id Description
35.1not assigned.no ontology
No SignalP domains detected for this gene.