Gene: AT5G55590 (Arabidopsis thaliana)

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Gene Identifier
AT5G55590
Transcript Identifier
AT5G55590.1
Gene Type
Coding gene
Location
5 : 22519911-22521699 : positive

Family

Gene family
HOM03M000058
(719 genes in 14 species)
specific family
Subfamily
ORTHO03M001757
(10 genes in 10 species)
specific family

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Descriptions

Description
Pectin lyase-like superfamily protein
Curated Summary
Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.
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Identifiers

Identifier Name
aliasQUARTET 1
aliasQRT1
uniprotQ9FM79

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045490IMPUniProtpectin catabolic process1 2 3 4 5 6 7
GO:0042545IEAUniProtcell wall modification1 2 3 4 5 6
GO:0009987IEAPLAZA Homologycellular processHOM03M000058
GO:0045229IEAPLAZA Homologyexternal encapsulating structure organizationHOM03M000058
GO:0071555IEAPLAZA Homologycell wall organizationHOM03M000058
GO:0071554IEAPLAZA Homologycell wall organization or biogenesisHOM03M000058
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03M000058
GO:0016043IEAPLAZA Homologycellular component organizationHOM03M000058

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030599IDA, ISSIEA, UniProtpectinesterase activity1 2 3 4 5 6 7 8
GO:0045330IEAUniProtaspartyl esterase activity1 2 3 4 5 6
GO:0052689IEAPLAZA Homologycarboxylic ester hydrolase activityHOM03M000058
GO:0016788IEAPLAZA Homologyhydrolase activity, acting on ester bondsHOM03M000058
GO:0003824IEAPLAZA Homologycatalytic activityHOM03M000058
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000058

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576IEA, ISMUniProtextracellular region1 2 3 4 5 6 7
GO:0009505ISSGene Ontologyplant-type cell wall1
GO:0005618IEAUniProtcell wall1 2 3 4 5 6
GO:0030312IEAPLAZA Homologyexternal encapsulating structureHOM03M000058
GO:0005623IEAPLAZA HomologycellHOM03M000058
GO:0071944IEAPLAZA Homologycell peripheryHOM03M000058
GO:0044464IEAPLAZA Homologycell partHOM03M000058

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000070Pectinesterase, catalytic
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold

Mapman id Description
10.8.1cell wall.pectin*esterases.PME
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network