Gene: AT5G55480 (Arabidopsis thaliana)

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Gene Identifier
AT5G55480
Transcript Identifier
AT5G55480.1
Gene Type
Coding gene
Location
5 : 22474277-22477819 : positive

Family

Gene family
HOM03M000802
(87 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
SHV3-like 1
Curated Summary
Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.
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Identifiers

Identifier Name
aliasglycerophosphodiesterase-like 1
aliasGlycerophosphodiester phosphodiesterase (GDPD) like 4
aliasSVL1
aliasGDPDL4
aliasSHV3-like 1
aliasGPDL1
uniprotQ9FJ62

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006071IEA, ISSUniProtglycerol metabolic process1 2 3 4 5
GO:0010026IGIUniProttrichome differentiation1 2 3 4 5
GO:0010442IGIUniProtguard cell morphogenesis1 2 3 4 5
GO:0052541IGI, RCA, UniProtplant-type cell wall cellulose metabolic process1 2 3 4 5 6
GO:0000272RCAGene Ontologypolysaccharide catabolic process1
GO:0005982RCAGene Ontologystarch metabolic process1
GO:0007155RCAGene Ontologycell adhesion1
GO:0009653RCAGene Ontologyanatomical structure morphogenesis1
GO:0009664RCAGene Ontologyplant-type cell wall organization1
GO:0009832RCAGene Ontologyplant-type cell wall biogenesis1
GO:0010054RCAGene Ontologytrichoblast differentiation1
GO:0010075RCAGene Ontologyregulation of meristem growth1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0042545RCAGene Ontologycell wall modification1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0048364RCAGene Ontologyroot development1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0048869RCAGene Ontologycellular developmental process1
GO:0052546RCAGene Ontologycell wall pectin metabolic process1
GO:0071555RCAGene Ontologycell wall organization1
GO:0006629IEAUniProtlipid metabolic process1 2 3 4

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008889IEA, ISSUniProtglycerophosphodiester phosphodiesterase activity1 2 3 4 5
GO:0008081IEAInterProphosphoric diester hydrolase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005886IDA, ISMGene Ontologyplasma membrane1 2
GO:0031225TASGene Ontologyanchored to membrane1
GO:0046658IDAUniProtanchored to plasma membrane1 2 3 4 5
GO:0009506IDAUniProtplasmodesma1 2 3 4 5

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR017946PLC-like phosphodiesterase, TIM beta/alpha-barrel domain
IPR004129Glycerophosphoryl diester phosphodiesterase

Mapman id Description
11.9.3.3lipid metabolism.lipid degradation.lysophospholipases.glycerophosphodiester phosphodiesterase
No SignalP domains detected for this gene.