Gene: AT5G52260 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT5G52260
- Transcript Identifier
- AT5G52260.1
- Gene Type
- Coding gene
- Location
- 5 : 21220165-21221223 : positive
Family
- Gene family
Descriptions
- Description
-
myb domain protein 19
- Curated Summary
-
Member of the R2R3 factor gene family.
Identifiers
Identifier | Name |
---|---|
alias | MYB19 |
alias | myb domain protein 19 |
alias | AtMYB19 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Biological Process
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0006355 | ISS | Gene Ontology | regulation of transcription, DNA-dependent | 1 |
Molecular Function
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0003677 | ISS, IEA | Gene Ontology | DNA binding | 1 |
GO:0003700 | ISS | Gene Ontology | sequence-specific DNA binding transcription factor activity | 1 |
GO:0003682 | IEA | InterPro | chromatin binding | |
GO:0005488 | IEA | PLAZA Homology | binding | HOM03M000013 |
GO:1901363 | IEA | PLAZA Homology | heterocyclic compound binding | HOM03M000013 |
GO:0097159 | IEA | PLAZA Homology | organic cyclic compound binding | HOM03M000013 |
GO:0003676 | IEA | PLAZA Homology | nucleic acid binding | HOM03M000013 |
Cellular Component
GO term | Evidence(s) | Provider | Description | Source |
---|---|---|---|---|
GO:0005634 | ISM | Gene Ontology | nucleus | 1 |
Color Legend
Experimental Evidence |
Electronic Evidence |
Computational Reviewed Evidence |
Mapman id | Description |
---|---|
27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family |
No SignalP domains detected for this gene.
Database | Type |
---|---|
PlnTFDB | MYB |