PLAZA 3.0 Monocots gene overview : AT5G51230

Gene: AT5G51230 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G51230
Transcript Identifier: AT5G51230.1
Gene Type: Coding gene
Location: 5 : 20824153-20829344 : positive

Family

Gene family: HOM03M002064
(40 genes in 16 species)
specific family
Subfamily: ORTHO03M014165
(3 genes in 2 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: VEFS-Box of polycomb protein

Curated Summary: Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.

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Identifiers

Identifier	Name
alias	EMBRYONIC FLOWER 2
alias	VEF2
alias	AtEMF2
alias	CYTOKININ RESISTANT 1
alias	CYR1
alias	EMF2
uniprot	Q8L6Y4

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006349	IMP, RCA,	UniProt	regulation of gene expression by genetic imprinting	1 2 3 4 5 6 7
GO:0010048	RCA	Gene Ontology	vernalization response	1
GO:0016571	RCA	Gene Ontology	histone methylation	1
GO:0009910	IMP	UniProt	negative regulation of flower development	1 2 3 4 5 6
GO:0030154	IEA	UniProt	cell differentiation	1 2 3 4 5
GO:0009908	IEA	UniProt	flower development	1 2 3 4 5
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5
GO:0071514	IEA	PLAZA Homology	genetic imprinting	HOM03M002064

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	ISS	UniProt	sequence-specific DNA binding transcription factor activity	1 2 3 4 5 6
GO:0003677	ISS	UniProt	DNA binding	1 2 3 4 5 6
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0046872	IEA	UniProt	metal ion binding	1 2 3 4 5

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISMISS,	UniProt	nucleus	1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR019135	Polycomb protein, VEFS-Box

Mapman id	Description
27.3.65	RNA.regulation of transcription.Polycomb Group (PcG)
33.99	development.unspecified

No SignalP domains detected for this gene.