PLAZA 3.0 Monocots gene overview : AT5G49160

Gene: AT5G49160 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G49160
Transcript Identifier: AT5G49160.1
Gene Type: Coding gene
Location: 5 : 19932501-19938186 : positive

Family

Gene family: HOM03M002194
(38 genes in 15 species)
specific family

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Descriptions

Description: methyltransferase 1

Curated Summary: Encodes a cytosine methyltransferase MET1. Required for silencing of FWA paternal allele in endosperm. Two lines with RNAi constructs directed against DMT1 have reduced agrobacterium-mediated tumor formation.

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Identifiers

Identifier	Name
alias	MET1
alias	METHYLTRANSFERASE I
alias	DNA METHYLTRANSFERASE 01
alias	methyltransferase 1
alias	DECREASED DNA METHYLATION 2
alias	METI
alias	DMT1
alias	MET2
alias	DNA METHYLTRANSFERASE 1
alias	METHYLTRANSFERASE 2
alias	DDM2
alias	DMT01
uniprot	P34881

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010069	IMP	UniProt	zygote asymmetric cytokinesis in embryo sac	1 2 3 4 5 6 7 8 9 10
GO:0006349	IMP	UniProt	regulation of gene expression by genetic imprinting	1 2 3 4 5 6 7 8 9 10
GO:0010216	IMP	UniProt	maintenance of DNA methylation	1 2 3 4 5 6 7 8 9 10
GO:0010424	IMP	UniProt	DNA methylation on cytosine within a CG sequence	1 2 3 4 5 6 7 8 9 10
GO:0009294	IMP	UniProt	DNA mediated transformation	1 2 3 4 5 6 7 8 9 10
GO:0006260	RCA	Gene Ontology	DNA replication	1
GO:0006261	RCA	Gene Ontology	DNA-dependent DNA replication	1
GO:0006306	RCA, IEA	Gene Ontology	DNA methylation	1
GO:0006333	RCA	Gene Ontology	chromatin assembly or disassembly	1
GO:0006342	RCA	Gene Ontology	chromatin silencing	1
GO:0008283	RCA	Gene Ontology	cell proliferation	1
GO:0009909	RCA	Gene Ontology	regulation of flower development	1
GO:0016458	RCA	Gene Ontology	gene silencing	1
GO:0034968	RCA	Gene Ontology	histone lysine methylation	1
GO:0051567	RCA	Gene Ontology	histone H3-K9 methylation	1
GO:0009910	IMP	UniProt	negative regulation of flower development	1 2 3 4 5 6 7 8 9 10
GO:0016568	IEA	UniProt	chromatin modification	1 2 3 4 5 6 7 8 9
GO:0006305	IEA	PLAZA Homology	DNA alkylation	HOM03M002194

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0008168	TAS, IEA,	UniProt	methyltransferase activity	1 2 3 4 5 6 7 8 9 10
GO:0003886	IEA	UniProt	DNA (cytosine-5-)-methyltransferase activity	1 2 3 4 5 6 7 8 9
GO:0003677	IEA	UniProt	DNA binding	1 2 3 4 5 6 7 8 9

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM	UniProt	nucleus	1 2 3 4 5 6 7 8 9 10

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001025	Bromo adjacent homology (BAH) domain
IPR001525	C-5 cytosine methyltransferase
IPR018117	DNA methylase, C-5 cytosine-specific, active site
IPR022702	DNA (cytosine-5)-methyltransferase 1, replication foci domain

Mapman id	Description
27.3.46	RNA.regulation of transcription.DNA methyltransferases

No SignalP domains detected for this gene.