Gene: AT5G48140 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G48140
Transcript Identifier
AT5G48140.1
Gene Type
Coding gene
Location
5 : 19518907-19520412 : negative

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Pectin lyase-like superfamily protein
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Identifiers

Identifier Name

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975ISS, IEAGene Ontologycarbohydrate metabolic process1
GO:0009827RCAGene Ontologyplant-type cell wall modification1
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650ISS, IEAGene Ontologypolygalacturonase activity1
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576ISMGene Ontologyextracellular region1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor
IPR012334Pectin lyase fold

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network