Gene: AT5G43990 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G43990
Transcript Identifier
AT5G43990.2
Gene Type
Coding gene
Location
5 : 17698454-17701733 : positive

Family

Gene family
HOM03M001722
(45 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
SET-domain containing protein lysine methyltransferase family protein
Curated Summary
Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
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Identifiers

Identifier Name
aliasSDG18
aliasSUVR2
aliasSET DOMAIN PROTEIN 18
uniprotQ9FNC7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0006260RCAGene OntologyDNA replication1
GO:0006270RCAGene OntologyDNA replication initiation1
GO:0006275RCAGene Ontologyregulation of DNA replication1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0008283RCAGene Ontologycell proliferation1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0016246RCAGene OntologyRNA interference1
GO:0016570RCAGene Ontologyhistone modification1
GO:0031047RCAGene Ontologygene silencing by RNA1
GO:0031048RCAGene Ontologychromatin silencing by small RNA1
GO:0034968RCA, IEAGene Ontologyhistone lysine methylation1
GO:0048449RCAGene Ontologyfloral organ formation1
GO:0048451RCAGene Ontologypetal formation1
GO:0048453RCAGene Ontologysepal formation1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1
GO:0051726RCAGene Ontologyregulation of cell cycle1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0018024IEAUniProthistone-lysine N-methyltransferase activity1 2
GO:0008270IEAUniProtzinc ion binding1 2
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3
GO:0005730IDAGene Ontologynucleolus1
GO:0009507IDAGene Ontologychloroplast1
GO:0005694IEAUniProtchromosome1 2

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001214SET domain
IPR003606Pre-SET zinc-binding sub-group
IPR007728Pre-SET domain
IPR018848WIYLD domain
IPR025776Histone-lysine N-methyltransferase SUVR1/2/4

Mapman id Description
27.3.69RNA.regulation of transcription.SET-domain transcriptional regulator family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBSET