Gene: AT5G42190 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G42190
Transcript Identifier
AT5G42190.1
Gene Type
Coding gene
Location
5 : 16854495-16855516 : negative

Family

Gene family
HOM03M000303
(182 genes in 16 species)
specific family
Subfamily
ORTHO03M000593
(13 genes in 8 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Curated Summary
Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.
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Identifiers

Identifier Name
aliasArabidopsis SKP-like 2
aliasASK2
aliasSKP1B
uniprotQ9FHW7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511TAS, RCA, IEA, UniProtubiquitin-dependent protein catabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
GO:0009793IGIUniProtembryo development ending in seed dormancy1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21
GO:0042023RCAGene OntologyDNA endoreduplication1
GO:0042752RCAGene Ontologyregulation of circadian rhythm1
GO:0043161RCAGene Ontologyproteasome-mediated ubiquitin-dependent protein catabolic process1
GO:0043248RCAGene Ontologyproteasome assembly1
GO:0051510RCAGene Ontologyregulation of unidimensional cell growth1
GO:0051788RCAGene Ontologyresponse to misfolded protein1
GO:0009734IEAUniProtauxin mediated signaling pathway1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
GO:0007059IEAUniProtchromosome segregation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
GO:0009873IEAUniProtethylene mediated signaling pathway1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
GO:0019048IEAUniProtmodulation by virus of host morphology or physiology1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
GO:0016567IEAUniProtprotein ubiquitination1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
GO:0044265IEAPLAZA Homologycellular macromolecule catabolic processHOM03M000303
GO:0009057IEAPLAZA Homologymacromolecule catabolic processHOM03M000303
GO:0043632IEAPLAZA Homologymodification-dependent macromolecule catabolic processHOM03M000303
GO:0030163IEAPLAZA Homologyprotein catabolic processHOM03M000303
GO:0051603IEAPLAZA Homologyproteolysis involved in cellular protein catabolic processHOM03M000303
GO:0019941IEAPLAZA Homologymodification-dependent protein catabolic processHOM03M000303
GO:0044248IEAPLAZA Homologycellular catabolic processHOM03M000303
GO:0044257IEAPLAZA Homologycellular protein catabolic processHOM03M000303

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842ISSGene Ontologyubiquitin-protein ligase activity1
GO:0005515IPIGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737NASGene Ontologycytoplasm1
GO:0019005NASGene OntologySCF ubiquitin ligase complex1
GO:0005634IEAUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001232SKP1 component
IPR016072SKP1 component, dimerisation
IPR011333BTB/POZ fold
IPR016073SKP1 component, POZ domain

Mapman id Description
29.5.11.4.3.1protein.degradation.ubiquitin.E3.SCF.SKP
No SignalP domains detected for this gene.