Gene: AT5G40330 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G40330
Transcript Identifier
AT5G40330.1
Gene Type
Coding gene
Location
5 : 16127849-16129468 : positive

Family

Gene family
HOM03M000013
(1897 genes in 16 species)
specific family
Subfamily
ORTHO03M018834
(2 genes in 1 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Loading...please wait

Descriptions

Description
myb domain protein 23
Curated Summary
Encodes a MYB gene that, when overexpressed ectopically, can induce ectopic trichome formation. It is a member of subgroup 15, together with WER and GL1. Members of this subgroup share a conserved motif of 19 amino acids in the putative transcription activation domain at the C-terminal end. The gene is expressed in leaves, stems, flowers, seeds and roots and quite strongly in trichomes. There is partial functional redundancy between ATMYB23 and GL1. The two proteins are functionally equivalent with respect to the regulation of trichome initiation but not with respect to trichome branching - which is controlled by MYB23 and not GL1.
Show more...

Identifiers

Identifier Name
aliasATMYBRTF
aliasMYB23
aliasmyb domain protein 23
aliasMYB DOMAIN PROTEIN 23
aliasATMYB23
uniprotQ96276

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355TASGene Ontologyregulation of transcription, DNA-dependent1
GO:0010026IMPGene Ontologytrichome differentiation1
GO:0010091IMPUniProttrichome branching1 2 3 4 5 6 7 8
GO:0048629IGIGene Ontologytrichome patterning1
GO:0010053IMPUniProtroot epidermal cell differentiation1 2 3 4 5 6 7 8
GO:0001708RCAGene Ontologycell fate specification1
GO:0009913RCAGene Ontologyepidermal cell differentiation1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEA, ISSUniProtDNA binding1 2 3 4 5 6 7 8
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8
GO:0005515IPIGene Ontologyprotein binding1
GO:0003682IEAUniProtchromatin binding1 2 3 4 5 6 7
GO:0005488IEAPLAZA HomologybindingHOM03M000013
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000013
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000013
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03M000013

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001005SANT/Myb domain
IPR017930Myb domain
IPR009057Homeodomain-like

Mapman id Description
27.3.25RNA.regulation of transcription.MYB domain transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMYB
PlantTFDBMYB