Gene: AT5G38470 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G38470
Transcript Identifier
AT5G38470.1
Gene Type
Coding gene
Location
5 : 15404720-15407500 : positive

Family

Gene family
HOM03M001111
(64 genes in 16 species)
specific family
Subfamily
ORTHO03M004336
(7 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Rad23 UV excision repair protein family
Curated Summary
Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
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Identifiers

Identifier Name
aliasRADIATION SENSITIVE23D
aliasRAD23D
uniprotQ84L30

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006289IEA, ISSUniProtnucleotide-excision repair1 2 3 4 5 6 7
GO:0009409IEPUniProtresponse to cold1 2 3 4 5 6 7
GO:0007067RCAGene Ontologymitosis1
GO:0043161IEAUniProtproteasome-mediated ubiquitin-dependent protein catabolic process1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003684IEA, ISSUniProtdamaged DNA binding1 2 3 4 5 6 7
GO:0043130IDAGene Ontologyubiquitin binding1
GO:0070628IDAUniProtproteasome binding1 2 3 4 5 6 7
GO:0031593IDAUniProtpolyubiquitin binding1 2 3 4 5 6
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMIEA, UniProtnucleus1 2 3 4 5 6 7 8
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000626Ubiquitin domain
IPR004806UV excision repair protein Rad23
IPR000449Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
IPR009060UBA-like
IPR015360XPC-binding domain
IPR006636Heat shock chaperonin-binding
IPR015940Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote

Mapman id Description
28.2DNA.repair
No SignalP domains detected for this gene.