PLAZA 3.0 Monocots gene overview : AT5G38430

Gene: AT5G38430 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G38430
Transcript Identifier: AT5G38430.1
Gene Type: Coding gene
Location: 5 : 15384350-15385155 : negative

Family

Gene family: HOM03M000790
(89 genes in 16 species)
specific family
Subfamily: ORTHO03M013174
(3 genes in 1 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: Ribulose bisphosphate carboxylase (small chain) family protein

Curated Summary: Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410).

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Identifiers

Identifier	Name
alias	RBCS1B
alias	Rubisco small subunit 1B
uniprot	P10796

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0015977	ISS	Gene Ontology	carbon fixation	1
GO:0009637	IEP	UniProt	response to blue light	1 2 3 4
GO:0010114	IEP	UniProt	response to red light	1 2 3 4
GO:0010218	IEP	UniProt	response to far red light	1 2 3 4
GO:0009853	IEA	UniProt	photorespiration	1 2 3
GO:0019253	IEA	UniProt	reductive pentose-phosphate cycle	1 2 3

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016984	IEA, ISS	UniProt	ribulose-bisphosphate carboxylase activity	1 2 3 4
GO:0004497	IEA	UniProt	monooxygenase activity	1 2 3

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	IDA, ISM	Gene Ontology	chloroplast	1 2
GO:0009573	ISS	Gene Ontology	chloroplast ribulose bisphosphate carboxylase complex	1
GO:0009941	IDA	UniProt	chloroplast envelope	1 2 3 4
GO:0009570	IDA	UniProt	chloroplast stroma	1 2 3 4
GO:0009579	IDA	UniProt	thylakoid	1 2 3 4
GO:0016020	IDA	UniProt	membrane	1 2 3 4
GO:0048046	IDA	UniProt	apoplast	1 2 3 4
GO:0031969	IEA	UniProt	chloroplast membrane	1 2 3

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR024681	Ribulose bisphosphate carboxylase, small chain
IPR000894	Ribulose bisphosphate carboxylase small chain, domain
IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal

Mapman id	Description
1.3.2	PS.calvin cycle.rubisco small subunit

No SignalP domains detected for this gene.