Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene: AT5G24520 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT5G24520
- Transcript Identifier
- AT5G24520.1
- Gene Type
- Coding gene
- Location
- 5 : 8371708-8372733 : negative
Family
- Gene family
Descriptions
- Description
-
Transducin/WD40 repeat-like superfamily protein
- Curated Summary
-
Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. Auxin and ethylene responsiveness of TTG1 transcription is lost in myb12 mutants.
Identifiers
| Identifier | Name |
|---|---|
| alias | URM23 |
| alias | TTG |
| alias | TTG1 |
| alias | TRANSPARENT TESTA GLABRA 1 |
| alias | ATTTG1 |
| alias | UNARMED 23 |
| uniprot | Q9XGN1 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0010026 | IMP | UniProt | trichome differentiation | 1 2 3 4 5 6 7 8 |
| GO:0045165 | IMP | Gene Ontology | cell fate commitment | 1 |
| GO:0032880 | IMP, RCA, | UniProt | regulation of protein localization | 1 2 3 4 5 6 7 8 9 |
| GO:0009723 | IEP | UniProt | response to ethylene | 1 2 3 4 5 6 7 8 |
| GO:0009733 | IEP | UniProt | response to auxin | 1 2 3 4 5 6 7 8 |
| GO:0006612 | RCA | Gene Ontology | protein targeting to membrane | 1 |
| GO:0009963 | RCA | Gene Ontology | positive regulation of flavonoid biosynthetic process | 1 |
| GO:0010363 | RCA | Gene Ontology | regulation of plant-type hypersensitive response | 1 |
| GO:0009957 | IMP | UniProt | epidermal cell fate specification | 1 2 3 4 5 6 7 8 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0000166 | ISS | Gene Ontology | nucleotide binding | 1 |
| GO:0005515 | IPI, IEA | Gene Ontology | protein binding | 1 |
| GO:0003677 | IDA | UniProt | DNA binding | 1 2 3 4 5 6 7 8 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005737 | IDA, ISM, | UniProt | cytoplasm | 1 2 3 4 5 6 7 8 9 |
| GO:0005634 | IDA | UniProt | nucleus | 1 2 3 4 5 6 7 8 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 33.99 | development.unspecified |
No SignalP domains detected for this gene.