Gene: AT5G24330 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G24330
Transcript Identifier
AT5G24330.1
Gene Type
Coding gene
Location
5 : 8295245-8296997 : negative

Family

Gene family
HOM03M002502
(34 genes in 14 species)
specific family
Subfamily
ORTHO03M004381
(7 genes in 6 species)
specific family

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Descriptions

Description
ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
Curated Summary
Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.
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Identifiers

Identifier Name
aliasATXR6
aliasARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
aliasSDG34
aliasSET DOMAIN PROTEIN 34
uniprotQ9FNE9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISSGene Ontologyregulation of transcription, DNA-dependent1
GO:0009901IMPUniProtanther dehiscence1 2 3 4
GO:0051726IEPUniProtregulation of cell cycle1 2 3 4
GO:0070734IDAGene Ontologyhistone H3-K27 methylation1
GO:0006275IGI, RCA, UniProtregulation of DNA replication1 2 3 4 5
GO:0000280RCAGene Ontologynuclear division1
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0006261RCAGene OntologyDNA-dependent DNA replication1
GO:0010389RCAGene Ontologyregulation of G2/M transition of mitotic cell cycle1
GO:0042023RCAGene OntologyDNA endoreduplication1
GO:0051225RCAGene Ontologyspindle assembly1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISSGene OntologyDNA binding1
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0046976IDAUniProthistone methyltransferase activity (H3-K27 specific)1 2 3 4
GO:0008270IEAUniProtzinc ion binding1 2 3

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001965Zinc finger, PHD-type
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR011011Zinc finger, FYVE/PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR019787Zinc finger, PHD-finger
IPR001214SET domain

Mapman id Description
27.3.69RNA.regulation of transcription.SET-domain transcriptional regulator family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD