Gene: AT5G23570 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G23570
Transcript Identifier
AT5G23570.1
Gene Type
Coding gene
Location
5 : 7943621-7945874 : positive

Family

Gene family
HOM03M002146
(39 genes in 14 species)
specific family
Subfamily
ORTHO03M002891
(8 genes in 8 species)
specific family

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Descriptions

Description
XS domain-containing protein / XS zinc finger domain-containing protein-related
Curated Summary
Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.
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Identifiers

Identifier Name
aliasSUPPRESSOR OF GENE SILENCING 3
aliasATSGS3
aliasSGS3
uniprotQ9LDX1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009616IMP, RCA, UniProtvirus induced gene silencing1 2 3 4 5 6 7 8 9
GO:0010050IMP, RCA, UniProtvegetative phase change1 2 3 4 5 6 7 8 9
GO:0010267IMP, RCA, UniProtproduction of ta-siRNAs involved in RNA interference1 2 3 4 5 6 7 8 9
GO:0051607IMPGene Ontologydefense response to virus1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0010025IGIUniProtwax biosynthetic process1 2 3 4 5 6 7 8
GO:0019048IEAUniProtmodulation by virus of host morphology or physiology1 2 3 4 5 6 7
GO:0050688IEAUniProtregulation of defense response to virus1 2 3 4 5 6 7
GO:0031047IEAInterProgene silencing by RNA

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IDA, ISMGene Ontologycytoplasm1 2
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8
GO:0005783IDAUniProtendoplasmic reticulum1 2 3 4 5 6 7 8
GO:0048471IEAUniProtperinuclear region of cytoplasm1 2 3 4 5 6 7

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005380XS domain
IPR005381Zinc finger-XS domain

Mapman id Description
27.3.99RNA.regulation of transcription.unclassified
No SignalP domains detected for this gene.