Gene: AT5G23080 (Arabidopsis thaliana)

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Gene Identifier
AT5G23080
Transcript Identifier
AT5G23080.1
Gene Type
Coding gene
Location
5 : 7743226-7748889 : negative

Family

Gene family
HOM03M006026
(17 genes in 16 species)
specific family

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Descriptions

Description
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Curated Summary
Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. It is an important component of miRNA and siRNA biogenesis. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.
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Identifiers

Identifier Name
aliasTGH
aliasTOUGH

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396ISS, RCA, TAS, IEAGene OntologyRNA processing1 2 3
GO:0009734IMPGene Ontologyauxin mediated signaling pathway1
GO:0009926IMPGene Ontologyauxin polar transport1
GO:0010087IMPGene Ontologyphloem or xylem histogenesis1
GO:0000278RCAGene Ontologymitotic cell cycle1
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0030422IMPGene Ontologyproduction of siRNA involved in RNA interference1
GO:0035196IMPGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISS, TAS, IEAGene OntologyRNA binding1 2
GO:0005515IPIGene Ontologyprotein binding1
GO:0070878IDAGene Ontologyprimary miRNA binding1
GO:0070883IDAGene Ontologypre-miRNA binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000061SWAP/Surp
IPR011666Domain of unknown function DUF1604

Mapman id Description
27.1RNA.processing
No SignalP domains detected for this gene.