Gene: AT5G22800 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G22800
Transcript Identifier
AT5G22800.1
Gene Type
Coding gene
Location
5 : 7616221-7619961 : negative

Family

Gene family
HOM03M001299
(58 genes in 16 species)
specific family

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Descriptions

Description
Alanyl-tRNA synthetase, class IIc
Curated Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
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Identifiers

Identifier Name
aliasEMB1030
aliasEMB263
aliasEMB86
aliasEMBRYO DEFECTIVE 263
aliasEMBRYO DEFECTIVE 1030
aliasEMBRYO DEFECTIVE 86
uniprotQ9FFC7

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006419IEA, ISSUniProtalanyl-tRNA aminoacylation1 2 3 4 5
GO:0009793IMPUniProtembryo development ending in seed dormancy1 2 3 4 5
GO:0043039IEAInterProtRNA aminoacylation

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004813IEAUniProtalanine-tRNA ligase activity1 2 3 4
GO:0005524IEAUniProtATP binding1 2 3 4
GO:0000049IEAUniProttRNA binding1 2 3 4
GO:0008270IEAUniProtzinc ion binding1 2 3 4
GO:0000166IEAInterPronucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:0016876IEAInterProligase activity, forming aminoacyl-tRNA and related compounds

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739IDAUniProtmitochondrion1 2 3 4 5
GO:0009507IDA, IEAGene Ontologychloroplast1
GO:0016020IDAUniProtmembrane1 2 3 4 5
GO:0009570IDAUniProtchloroplast stroma1 2 3 4 5
GO:0005737IEAInterProcytoplasm

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002318Alanine-tRNA ligase, class IIc
IPR009000Translation protein, beta-barrel domain
IPR023033Alanine-tRNA ligase, eukaryota/bacteria
IPR012947Threonyl/alanyl tRNA synthetase, SAD
IPR018165Alanyl-tRNA synthetase, class IIc, core domain
IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain
IPR027522Probable alanine--tRNA ligase, plants
IPR018164Alanyl-tRNA synthetase, class IIc, N-terminal
IPR018162Alanine-tRNA ligase, class IIc, anti-codon-binding domain
IPR003156Phosphoesterase, DHHA1

Mapman id Description
29.1.7protein.aa activation.alanine-tRNA ligase
No SignalP domains detected for this gene.