Gene: AT5G22260 (Arabidopsis thaliana)

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Gene Identifier
AT5G22260
Transcript Identifier
AT5G22260.1
Gene Type
Coding gene
Location
5 : 7367707-7370192 : negative

Family

Gene family
HOM03M001006
(72 genes in 16 species)
specific family
Subfamily
ORTHO03M024557
(2 genes in 2 species)
specific family

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Descriptions

Description
RING/FYVE/PHD zinc finger superfamily protein
Curated Summary
Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors.
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Identifiers

Identifier Name
aliasMS1
aliasmale sterility 1
uniprotQ9FMS5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISSGene Ontologyregulation of transcription, DNA-dependent1
GO:0009846IMPUniProtpollen germination1 2 3 4 5 6 7 8 9 10
GO:0010208IMPUniProtpollen wall assembly1 2 3 4 5 6 7 8 9 10
GO:0045893IMPUniProtpositive regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10
GO:0048655IMPUniProtanther wall tapetum morphogenesis1 2 3 4 5 6 7 8 9 10
GO:0055046IMPUniProtmicrogametogenesis1 2 3 4 5 6 7 8 9 10
GO:0071367IEPUniProtcellular response to brassinosteroid stimulus1 2 3 4 5 6 7 8 9 10
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISSGene OntologyDNA binding1
GO:0003700ISSGene Ontologysequence-specific DNA binding transcription factor activity1 AGRICOLA_IND:IND23242106
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7 8 9
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739ISMGene Ontologymitochondrion1
GO:0005634IDAUniProtnucleus1 2 3 4 5 6 7 8 9 10

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR011011Zinc finger, FYVE/PHD-type
IPR001965Zinc finger, PHD-type
IPR019786Zinc finger, PHD-type, conserved site

Mapman id Description
27.3.63RNA.regulation of transcription.PHD finger transcription factor
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD