PLAZA 3.0 Monocots gene overview : AT5G22010

Gene: AT5G22010 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G22010
Transcript Identifier: AT5G22010.1
Gene Type: Coding gene
Location: 5 : 7280632-7287037 : negative

Family

Gene family: HOM03M004799
(20 genes in 16 species)
specific family

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Descriptions

Description: replication factor C1

Curated Summary: Encodes RFC1, the largest subunit of replication factor C. Mediates genomic stability and transcriptional gene silencing.

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Identifiers

Identifier	Name
alias	replication factor C 1
alias	RFC1
alias	AtRFC1
alias	replication factor C1
uniprot	Q9C587

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006974	IMP	UniProt	cellular response to DNA damage stimulus	1 2 3 4 5 6
GO:0031935	IMP	UniProt	regulation of chromatin silencing	1 2 3 4 5 6
GO:0051570	IMP	UniProt	regulation of histone H3-K9 methylation	1 2 3 4 5 6
GO:0009737	IDA	UniProt	response to abscisic acid	1 2 3 4 5 6
GO:0007126	IMP	Gene Ontology	meiosis	1
GO:0000003	IMP	Gene Ontology	reproduction	1
GO:0000712	IMP	UniProt	resolution of meiotic recombination intermediates	1 2 3 4 5 6
GO:0006281	IEA	UniProt	DNA repair	1 2 3 4 5
GO:0006260	IEA	UniProt	DNA replication	1 2 3 4 5

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA, ISS	UniProt	ATP binding	1 2 3 4 5 6
GO:0003689	IEA	UniProt	DNA clamp loader activity	1 2 3 4 5
GO:0003887	IEA	UniProt	DNA-directed DNA polymerase activity	1 2 3 4 5
GO:0017111	IEA	InterPro	nucleoside-triphosphatase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003677	IEA	InterPro	DNA binding
GO:0033170	IEA	PLAZA Homology	protein-DNA loading ATPase activity	HOM03M004799

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IEA, ISM	UniProt	nucleus	1 2 3 4 5 6
GO:0009360	IEA	UniProt	DNA polymerase III complex	1 2 3 4 5
GO:0005663	IEA	UniProt	DNA replication factor C complex	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013725	DNA replication factor RFC1, C-terminal
IPR010372	DNA polymerase III, delta
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
IPR003959	ATPase, AAA-type, core
IPR001357	BRCT domain
IPR003593	AAA+ ATPase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
28.1	DNA.synthesis/chromatin structure

No SignalP domains detected for this gene.