Gene: AT5G20510 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G20510
Transcript Identifier
AT5G20510.1
Gene Type
Coding gene
Location
5 : 6939991-6942846 : negative

Family

Gene family
HOM03M000359
(166 genes in 16 species)
specific family
Subfamily
ORTHO03M004849
(7 genes in 7 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
alfin-like 5
Curated Summary
Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).
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Identifiers

Identifier Name
aliasAL5
aliasalfin-like 5
uniprotQ5XEM9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEA, ISSUniProtregulation of transcription, DNA-dependent1 2 3
GO:0016568IEAUniProtchromatin modification1 2
GO:0006351IEAUniProttranscription, DNA-templated1 2
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M000359

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISSGene OntologyDNA binding1
GO:0035064ISSGene Ontologymethylated histone residue binding1
GO:0008270IEAUniProtzinc ion binding1 2
GO:0005515IEAInterProprotein binding
GO:0042393IEAInterProhistone binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR019786Zinc finger, PHD-type, conserved site
IPR011011Zinc finger, FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR001965Zinc finger, PHD-type
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR021998Alfin

Mapman id Description
27.3.2RNA.regulation of transcription.Alfin-like
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBAlfin-like