Gene: AT5G16560 (Arabidopsis thaliana)

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Gene Identifier
AT5G16560
Transcript Identifier
AT5G16560.1
Gene Type
Coding gene
Location
5 : 5407365-5411092 : negative

Family

Gene family
HOM03M000071
(625 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Homeodomain-like superfamily protein
Curated Summary
Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.
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Identifiers

Identifier Name
aliasKAN
aliasKANADI
aliasKANADI 1
aliasKAN1
uniprotQ93WJ9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009887IMPUniProtorgan morphogenesis1 2 3 4 5 6 7 8 9 10
GO:0009956IMPUniProtradial pattern formation1 2 3 4 5 6 7 8 9 10
GO:0010051IMPUniProtxylem and phloem pattern formation1 2 3 4 5 6 7 8 9 10
GO:0010158IMPUniProtabaxial cell fate specification1 2 3 4 5 6 7 8 9 10
GO:0048440IGIGene Ontologycarpel development1
GO:0048481IGIUniProtovule development1 2 3 4 5 6 7 8 9 10
GO:0009944IGIUniProtpolarity specification of adaxial/abaxial axis1 2 3 4 5 6 7 8 9 10
GO:0009943IMPGene Ontologyadaxial/abaxial axis specification1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10
GO:0005515IPIGene Ontologyprotein binding1
GO:0003682IEAUniProtchromatin binding1 2 3 4 5 6 7 8 9
GO:0003677IEAUniProtDNA binding1 2 3 4 5 6 7 8 9
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000071
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000071
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03M000071

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMISS, UniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006447Myb domain, plants
IPR009057Homeodomain-like
IPR001005SANT/Myb domain

Mapman id Description
27.3.20RNA.regulation of transcription.G2-like transcription factor family, GARP
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBG2-like
PlantTFDBG2-like