PLAZA 3.0 Monocots gene overview : AT5G15840

Gene: AT5G15840 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G15840
Transcript Identifier: AT5G15840.1
Gene Type: Coding gene
Location: 5 : 5171343-5172697 : negative

Family

Gene family: HOM03M000253
(208 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: B-box type zinc finger protein with CCT domain

Curated Summary: Encodes a protein showing similarities to zinc finger transcription factors, involved in regulation of flowering under long days. Acts upstream of FT and SOC1.

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Identifiers

Identifier	Name
alias	BBX1
alias	CO
alias	FG
alias	B-box domain protein 1
alias	CONSTANS
uniprot	Q39057

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007623	IGI	Gene Ontology	circadian rhythm	1
GO:0009909	IMP	UniProt	regulation of flower development	1 2 3 4 5 6 7 8 9 10
GO:0010018	IMP	UniProt	far-red light signaling pathway	1 2 3 4 5 6 7 8 9 10
GO:0010218	IMP	Gene Ontology	response to far red light	1
GO:0006281	RCA	Gene Ontology	DNA repair	1
GO:0010100	RCA	Gene Ontology	negative regulation of photomorphogenesis	1
GO:0048608	RCA	Gene Ontology	reproductive structure development	1
GO:0030154	IEA	UniProt	cell differentiation	1 2 3 4 5 6 7 8 9
GO:0009908	IEA	UniProt	flower development	1 2 3 4 5 6 7 8 9
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6 7 8 9

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA, ISS	UniProt	zinc ion binding	1 2 3 4 5 6 7 8 9 10
GO:0003700	ISS	UniProt	sequence-specific DNA binding transcription factor activity	1 2 3 4 5 6 7 8 9 10
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0003677	IEA	UniProt	DNA binding	1 2 3 4 5 6 7 8 9

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISMNAS,	UniProt	nucleus	1 2 3 4 5 6 7 8 9 10 11 12
GO:0005622	IEA	InterPro	intracellular

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000315	Zinc finger, B-box
IPR010402	CCT domain

Mapman id	Description
33.99	development.unspecified

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	C2C2-CO-like
PlantTFDB	CO-like