Gene: AT5G15540 (Arabidopsis thaliana)

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Gene Identifier
AT5G15540
Transcript Identifier
AT5G15540.1
Gene Type
Coding gene
Location
5 : 5047887-5057411 : negative

Family

Gene family
HOM03M003513
(25 genes in 16 species)
specific family

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Descriptions

Description
PHD finger family protein
Curated Summary
Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.
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Identifiers

Identifier Name
aliasARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2
aliasATSCC2
aliasSISTER-CHROMATID COHESION 2
aliasSCC2
aliasEMB2773
aliasEMBRYO DEFECTIVE 2773

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793IMPGene Ontologyembryo development ending in seed dormancy1
GO:0034508IMPGene Ontologycentromere complex assembly1
GO:0051177IMPGene Ontologymeiotic sister chromatid cohesion1
GO:0007062IMP, RCAGene Ontologysister chromatid cohesion1 2
GO:0007131RCAGene Ontologyreciprocal meiotic recombination1
GO:0009790RCAGene Ontologyembryo development1
GO:0009880RCAGene Ontologyembryonic pattern specification1
GO:0010072RCAGene Ontologyprimary shoot apical meristem specification1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010431RCAGene Ontologyseed maturation1
GO:0016926RCAGene Ontologyprotein desumoylation1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0042138RCAGene Ontologymeiotic DNA double-strand break formation1
GO:0045132RCAGene Ontologymeiotic chromosome segregation1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0048316RCAGene Ontologyseed development1
GO:0050665RCAGene Ontologyhydrogen peroxide biosynthetic process1
GO:0051301RCAGene Ontologycell division1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0005488IEAInterProbinding
GO:0008270IEAInterProzinc ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR024986Sister chromatid cohesion C-terminal domain
IPR026003HEAT repeat associated with sister chromatid cohesion protein
IPR016024Armadillo-type fold
IPR019787Zinc finger, PHD-finger
IPR011989Armadillo-like helical
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR011011Zinc finger, FYVE/PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type

Mapman id Description
33.99development.unspecified
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD