Gene: AT5G13680 (Arabidopsis thaliana)

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Gene Identifier
AT5G13680
Transcript Identifier
AT5G13680.1
Gene Type
Coding gene
Location
5 : 4410522-4415471 : negative

Family

Gene family
HOM03M005751
(18 genes in 16 species)
specific family

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Descriptions

Description
IKI3 family protein
Curated Summary
A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1?ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. Mutants have no ncm5U (5-carbamoylmethyluridine).
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Identifiers

Identifier Name
aliasAtELP1
aliasELO2
aliasABO1
aliasABA-OVERLY SENSITIVE 1
aliasELONGATA 2
uniprotQ9FNA4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0032784ISSGene Ontologyregulation of DNA-dependent transcription, elongation1
GO:0008283IMPUniProtcell proliferation1 2 3 4 5 6
GO:0035265IMPUniProtorgan growth1 2 3 4 5 6
GO:0009787IMPUniProtregulation of abscisic acid-activated signaling pathway1 2 3 4 5 6
GO:0071215IMPUniProtcellular response to abscisic acid stimulus1 2 3 4 5 6
GO:0006979IMPUniProtresponse to oxidative stress1 2 3 4 5 6
GO:0008284IMPUniProtpositive regulation of cell proliferation1 2 3 4 5 6
GO:0009737IMPGene Ontologyresponse to abscisic acid1
GO:0031538IMPUniProtnegative regulation of anthocyanin metabolic process1 2 3 4 5 6
GO:2000024IMPUniProtregulation of leaf development1 2 3 4 5 6
GO:0010928IMPUniProtregulation of auxin mediated signaling pathway1 2 3 4 5 6
GO:0006400IMPUniProttRNA modification1 2 3 4 5 6
GO:0009965IMPUniProtleaf morphogenesis1 2 3 4 5 6
GO:0048530IMPUniProtfruit morphogenesis1 2 3 4 5 6
GO:0080178IMPUniProt5-carbamoylmethyluridine metabolic process1 2 3 4 5 6
GO:0006312RCAGene Ontologymitotic recombination1
GO:0009560RCAGene Ontologyembryo sac egg cell differentiation1
GO:0009738IEAUniProtabscisic acid-activated signaling pathway1 2 3 4 5
GO:0009734IEAUniProtauxin mediated signaling pathway1 2 3 4 5
GO:0006355IEAUniProtregulation of transcription, DNA-dependent1 2 3 4 5
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016746IEAUniProttransferase activity, transferring acyl groups1 2 3 4 5
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5 6
GO:0033588IDAUniProtElongator holoenzyme complex1 2 3 4 5 6
GO:0005829IDAUniProtcytosol1 2 3 4 5 6

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006849IKI3
IPR015943WD40/YVTN repeat-like-containing domain

Mapman id Description
27.3.54RNA.regulation of transcription.Histone acetyltransferases
No SignalP domains detected for this gene.