Gene: AT5G13300 (Arabidopsis thaliana)

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Gene Identifier
AT5G13300
Transcript Identifier
AT5G13300.1
Gene Type
Coding gene
Location
5 : 4255923-4262018 : negative

Family

Gene family
HOM03M001129
(64 genes in 16 species)
specific family

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Descriptions

Description
ARF GTPase-activating protein
Curated Summary
Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.
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Identifiers

Identifier Name
aliasSFC
aliasSCARFACE
aliasASCULAR NETWORK DEFECTIVE 3
aliasAGD3
aliasVAN3
aliasARF-GAP DOMAIN3
uniprotQ5W7F2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010087IMPUniProtphloem or xylem histogenesis1 2 3 4 5 6 7 8 9
GO:0009733IMPUniProtresponse to auxin1 2 3 4 5 6 7 8 9
GO:0009965IMPUniProtleaf morphogenesis1 2 3 4 5 6 7 8 9
GO:0010051IMP, RCA, UniProtxylem and phloem pattern formation1 2 3 4 5 6 7 8 9 10
GO:0006897IMPUniProtendocytosis1 2 3 4 5 6 7 8 9
GO:0000278RCAGene Ontologymitotic cell cycle1
GO:0003002RCAGene Ontologyregionalization1
GO:0007155RCAGene Ontologycell adhesion1
GO:0009855RCAGene Ontologydetermination of bilateral symmetry1
GO:0009887RCAGene Ontologyorgan morphogenesis1
GO:0009888RCAGene Ontologytissue development1
GO:0009944RCAGene Ontologypolarity specification of adaxial/abaxial axis1
GO:0010014RCAGene Ontologymeristem initiation1
GO:0010089RCAGene Ontologyxylem development1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010638RCAGene Ontologypositive regulation of organelle organization1
GO:0016049RCAGene Ontologycell growth1
GO:0033043RCAGene Ontologyregulation of organelle organization1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0048439RCAGene Ontologyflower morphogenesis1
GO:0048449RCAGene Ontologyfloral organ formation1
GO:0048519RCAGene Ontologynegative regulation of biological process1
GO:0048589RCAGene Ontologydevelopmental growth1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0071555RCAGene Ontologycell wall organization1
GO:0032312IEAUniProtregulation of ARF GTPase activity1 2 3 4 5 6 7 8

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008060IDA, IEA, UniProtARF GTPase activator activity1 2 3 4 5 6 7 8 9
GO:0035091IDAUniProtphosphatidylinositol binding1 2 3 4 5 6 7 8 9
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7 8
GO:0005543IEAInterProphospholipid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005794ISMGene OntologyGolgi apparatus1
GO:0030140IDAUniProttrans-Golgi network transport vesicle1 2 3 4 5 6 7 8 9
GO:0005886IDAUniProtplasma membrane1 2 3 4 5 6 7 8 9
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8 9
GO:0005737IEAInterProcytoplasm

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR004148BAR domain
IPR001849Pleckstrin homology domain
IPR002110Ankyrin repeat
IPR020683Ankyrin repeat-containing domain
IPR001164Arf GTPase activating protein
IPR011993Pleckstrin homology-like domain
IPR027267Arfaptin homology (AH) domain/BAR domain

Mapman id Description
30.5signalling.G-proteins
No SignalP domains detected for this gene.