Gene: AT5G12250 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G12250
Transcript Identifier
AT5G12250.1
Gene Type
Coding gene
Location
5 : 3961317-3962971 : negative

Family

Gene family
HOM03M000156
(308 genes in 16 species)
specific family

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Descriptions

Description
beta-6 tubulin
Curated Summary
Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
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Identifiers

Identifier Name
aliasbeta-6 tubulin
aliasTUB6
uniprotP29514

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009409IEPUniProtresponse to cold1 2 3 4
GO:0007017ISS, IEA, UniProtmicrotubule-based process1 2 3 4
GO:0009651IEP, RCA, UniProtresponse to salt stress1 2 3 4 5
GO:0000271RCAGene Ontologypolysaccharide biosynthetic process1
GO:0006084RCAGene Ontologyacetyl-CoA metabolic process1
GO:0006094RCAGene Ontologygluconeogenesis1
GO:0006096RCAGene Ontologyglycolysis1
GO:0006833RCAGene Ontologywater transport1
GO:0006972RCAGene Ontologyhyperosmotic response1
GO:0007010RCAGene Ontologycytoskeleton organization1
GO:0007030RCAGene OntologyGolgi organization1
GO:0009266RCAGene Ontologyresponse to temperature stimulus1
GO:0009740RCAGene Ontologygibberellic acid mediated signaling pathway1
GO:0009825RCAGene Ontologymultidimensional cell growth1
GO:0009932RCAGene Ontologycell tip growth1
GO:0010162RCAGene Ontologyseed dormancy process1
GO:0010498RCAGene Ontologyproteasomal protein catabolic process1
GO:0010817RCAGene Ontologyregulation of hormone levels1
GO:0016126RCAGene Ontologysterol biosynthetic process1
GO:0016132RCAGene Ontologybrassinosteroid biosynthetic process1
GO:0019344RCAGene Ontologycysteine biosynthetic process1
GO:0043481RCAGene Ontologyanthocyanin accumulation in tissues in response to UV light1
GO:0046686RCAGene Ontologyresponse to cadmium ion1
GO:0048767RCAGene Ontologyroot hair elongation1
GO:0071555RCAGene Ontologycell wall organization1
GO:0051258IEAUniProtprotein polymerization1 2 3
GO:0006184IEAInterProGTP catabolic process
GO:0009203IEAPLAZA Homologyribonucleoside triphosphate catabolic processHOM03M000156
GO:0009205IEAPLAZA Homologypurine ribonucleoside triphosphate metabolic processHOM03M000156
GO:0043623IEAPLAZA Homologycellular protein complex assemblyHOM03M000156
GO:0009207IEAPLAZA Homologypurine ribonucleoside triphosphate catabolic processHOM03M000156
GO:0046128IEAPLAZA Homologypurine ribonucleoside metabolic processHOM03M000156
GO:0006753IEAPLAZA Homologynucleoside phosphate metabolic processHOM03M000156
GO:0046130IEAPLAZA Homologypurine ribonucleoside catabolic processHOM03M000156
GO:0006152IEAPLAZA Homologypurine nucleoside catabolic processHOM03M000156
GO:0042454IEAPLAZA Homologyribonucleoside catabolic processHOM03M000156
GO:0019439IEAPLAZA Homologyaromatic compound catabolic processHOM03M000156
GO:0046700IEAPLAZA Homologyheterocycle catabolic processHOM03M000156
GO:1901292IEAPLAZA Homologynucleoside phosphate catabolic processHOM03M000156
GO:0019637IEAPLAZA Homologyorganophosphate metabolic processHOM03M000156
GO:0016043IEAPLAZA Homologycellular component organizationHOM03M000156
GO:1901575IEAPLAZA Homologyorganic substance catabolic processHOM03M000156
GO:0019693IEAPLAZA Homologyribose phosphate metabolic processHOM03M000156
GO:0044085IEAPLAZA Homologycellular component biogenesisHOM03M000156
GO:1901069IEAPLAZA Homologyguanosine-containing compound catabolic processHOM03M000156
GO:1901068IEAPLAZA Homologyguanosine-containing compound metabolic processHOM03M000156
GO:0044281IEAPLAZA Homologysmall molecule metabolic processHOM03M000156
GO:0009261IEAPLAZA Homologyribonucleotide catabolic processHOM03M000156
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03M000156
GO:1901565IEAPLAZA Homologyorganonitrogen compound catabolic processHOM03M000156
GO:0042278IEAPLAZA Homologypurine nucleoside metabolic processHOM03M000156
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03M000156
GO:0009199IEAPLAZA Homologyribonucleoside triphosphate metabolic processHOM03M000156
GO:0009056IEAPLAZA Homologycatabolic processHOM03M000156
GO:0055086IEAPLAZA Homologynucleobase-containing small molecule metabolic processHOM03M000156
GO:1901361IEAPLAZA Homologyorganic cyclic compound catabolic processHOM03M000156
GO:0034655IEAPLAZA Homologynucleobase-containing compound catabolic processHOM03M000156
GO:0072521IEAPLAZA Homologypurine-containing compound metabolic processHOM03M000156
GO:0072523IEAPLAZA Homologypurine-containing compound catabolic processHOM03M000156
GO:0009116IEAPLAZA Homologynucleoside metabolic processHOM03M000156
GO:0009119IEAPLAZA Homologyribonucleoside metabolic processHOM03M000156
GO:0006163IEAPLAZA Homologypurine nucleotide metabolic processHOM03M000156
GO:0009259IEAPLAZA Homologyribonucleotide metabolic processHOM03M000156
GO:0009117IEAPLAZA Homologynucleotide metabolic processHOM03M000156
GO:0071822IEAPLAZA Homologyprotein complex subunit organizationHOM03M000156
GO:0009146IEAPLAZA Homologypurine nucleoside triphosphate catabolic processHOM03M000156
GO:0009144IEAPLAZA Homologypurine nucleoside triphosphate metabolic processHOM03M000156
GO:0009143IEAPLAZA Homologynucleoside triphosphate catabolic processHOM03M000156
GO:0070271IEAPLAZA Homologyprotein complex biogenesisHOM03M000156
GO:0009141IEAPLAZA Homologynucleoside triphosphate metabolic processHOM03M000156
GO:0046434IEAPLAZA Homologyorganophosphate catabolic processHOM03M000156
GO:0043933IEAPLAZA Homologymacromolecular complex subunit organizationHOM03M000156
GO:0006195IEAPLAZA Homologypurine nucleotide catabolic processHOM03M000156
GO:0044712IEAPLAZA Homologysingle-organism catabolic processHOM03M000156
GO:0044270IEAPLAZA Homologycellular nitrogen compound catabolic processHOM03M000156
GO:0065003IEAPLAZA Homologymacromolecular complex assemblyHOM03M000156
GO:1901657IEAPLAZA Homologyglycosyl compound metabolic processHOM03M000156
GO:1901658IEAPLAZA Homologyglycosyl compound catabolic processHOM03M000156
GO:0009166IEAPLAZA Homologynucleotide catabolic processHOM03M000156
GO:0009164IEAPLAZA Homologynucleoside catabolic processHOM03M000156
GO:0022607IEAPLAZA Homologycellular component assemblyHOM03M000156
GO:0046039IEAPLAZA HomologyGTP metabolic processHOM03M000156
GO:0034622IEAPLAZA Homologycellular macromolecular complex assemblyHOM03M000156
GO:0009150IEAPLAZA Homologypurine ribonucleotide metabolic processHOM03M000156
GO:1901136IEAPLAZA Homologycarbohydrate derivative catabolic processHOM03M000156
GO:1901135IEAPLAZA Homologycarbohydrate derivative metabolic processHOM03M000156
GO:0009154IEAPLAZA Homologypurine ribonucleotide catabolic processHOM03M000156
GO:0006461IEAPLAZA Homologyprotein complex assemblyHOM03M000156
GO:0044248IEAPLAZA Homologycellular catabolic processHOM03M000156

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005200ISS, IEA, UniProtstructural constituent of cytoskeleton1 2 3 4
GO:0005525IEAUniProtGTP binding1 2 3
GO:0003924IEAUniProtGTPase activity1 2 3
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03M000156
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03M000156
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03M000156
GO:0019001IEAPLAZA Homologyguanyl nucleotide bindingHOM03M000156
GO:0005198IEAPLAZA Homologystructural molecule activityHOM03M000156
GO:0032561IEAPLAZA Homologyguanyl ribonucleotide bindingHOM03M000156
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03M000156
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03M000156

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IEA, ISMUniProtcytoplasm1 2 3 4
GO:0015630ISSUniProtmicrotubule cytoskeleton1 2 3 4
GO:0005886IDAUniProtplasma membrane1 2 3 4
GO:0005874IEAUniProtmicrotubule1 2 3
GO:0043234IEAInterProprotein complex
GO:0044430IEAPLAZA Homologycytoskeletal partHOM03M000156
GO:0044422IEAPLAZA Homologyorganelle partHOM03M000156
GO:0043228IEAPLAZA Homologynon-membrane-bounded organelleHOM03M000156
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03M000156
GO:0005856IEAPLAZA HomologycytoskeletonHOM03M000156
GO:0043232IEAPLAZA Homologyintracellular non-membrane-bounded organelleHOM03M000156
GO:0044446IEAPLAZA Homologyintracellular organelle partHOM03M000156

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR018316Tubulin/FtsZ, 2-layer sandwich domain
IPR002453Beta tubulin
IPR003008Tubulin/FtsZ, GTPase domain
IPR000217Tubulin
IPR013838Beta tubulin, autoregulation binding site
IPR008280Tubulin/FtsZ, C-terminal
IPR023123Tubulin, C-terminal
IPR017975Tubulin, conserved site

Mapman id Description
31.1cell.organisation
No SignalP domains detected for this gene.