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WorkbenchGene: AT5G10370 (Arabidopsis thaliana)
Overview 
- Gene Identifier
- AT5G10370
- Transcript Identifier
- AT5G10370.1
- Gene Type
- Coding gene
- Location
- 5 : 3261245-3267188 : positive
Family
- Gene family
- Duplication type
- Block duplicate
Descriptions
- Description
-
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Identifiers
| Identifier | Name |
|---|
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0003676 | ISS, IEA | Gene Ontology | nucleic acid binding | 1 |
| GO:0004386 | ISS, IEA | Gene Ontology | helicase activity | 1 |
| GO:0005524 | ISS, IEA | Gene Ontology | ATP binding | 1 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008026 | IEA | InterPro | ATP-dependent helicase activity | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0016817 | IEA | PLAZA Homology | hydrolase activity, acting on acid anhydrides | HOM03M000133 |
| GO:0042623 | IEA | PLAZA Homology | ATPase activity, coupled | HOM03M000133 |
| GO:0016818 | IEA | PLAZA Homology | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | HOM03M000133 |
| GO:0016462 | IEA | PLAZA Homology | pyrophosphatase activity | HOM03M000133 |
| GO:0016887 | IEA | PLAZA Homology | ATPase activity | HOM03M000133 |
| GO:0017111 | IEA | PLAZA Homology | nucleoside-triphosphatase activity | HOM03M000133 |
| GO:0070035 | IEA | PLAZA Homology | purine NTP-dependent helicase activity | HOM03M000133 |
Cellular Component
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| InterPro | Description |
|---|---|
| IPR014001 | Helicase, superfamily 1/2, ATP-binding domain |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR007502 | Helicase-associated domain |
| IPR011545 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| IPR001650 | Helicase, C-terminal |
| IPR001841 | Zinc finger, RING-type |
| IPR007087 | Zinc finger, C2H2 |
| IPR011709 | Domain of unknown function DUF1605 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR002867 | Zinc finger, C6HC-type |
| IPR002464 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site |
| Mapman id | Description |
|---|---|
| 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING |
No SignalP domains detected for this gene.