PLAZA 3.0 Monocots gene overview : AT5G09880

Gene: AT5G09880 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G09880
Transcript Identifier: AT5G09880.1
Gene Type: Coding gene
Location: 5 : 3081646-3085179 : negative

Family

Gene family: HOM03M002225
(36 genes in 16 species)
specific family
Subfamily: ORTHO03M022463
(2 genes in 2 species)
specific family

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Descriptions

Description: Splicing factor, CC1-like

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Identifiers

Identifier	Name

Toolbox

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...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006397	IEA	InterPro	mRNA processing

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	ISS, IEA	Gene Ontology	nucleic acid binding	1
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003723	IEA	InterPro	RNA binding
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M002225

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM, IEA	Gene Ontology	nucleus	1

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR006509	Splicing factor, CC1-like
IPR012677	Nucleotide-binding, alpha-beta plait

Mapman id	Description
27.4	RNA.RNA binding

No SignalP domains detected for this gene.