PLAZA 3.0 Monocots gene overview : AT5G06900

Gene: AT5G06900 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G06900
Transcript Identifier: AT5G06900.1
Gene Type: Coding gene
Location: 5 : 2136160-2137925 : negative

Family

Gene family: HOM03M000011
(2034 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

Loading...please wait

Descriptions

Description: cytochrome P450, family 93, subfamily D, polypeptide 1

Curated Summary: member of CYP93D

Show more...

Identifiers

Identifier	Name
alias	CYP93D1
alias	'cytochrome P450, family 93, subfamily D, polypeptide 1'

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	InterPro	oxidation-reduction process
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03M000011
GO:0044710	IEA	PLAZA Homology	single-organism metabolic process	HOM03M000011
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03M000011

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0019825	ISS	Gene Ontology	oxygen binding	1
GO:0005506	IEA	InterPro	iron ion binding
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	IEA	InterPro	heme binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03M000011
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000011
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03M000011
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000011
GO:0046906	IEA	PLAZA Homology	tetrapyrrole binding	HOM03M000011
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03M000011
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000011
GO:0005488	IEA	PLAZA Homology	binding	HOM03M000011
GO:0016491	IEA	PLAZA Homology	oxidoreductase activity	HOM03M000011
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000011

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002401	Cytochrome P450, E-class, group I
IPR017972	Cytochrome P450, conserved site
IPR001128	Cytochrome P450

Mapman id	Description
26.10	misc.cytochrome P450

No SignalP domains detected for this gene.