Gene: AT5G06160 (Arabidopsis thaliana)

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Gene Identifier
AT5G06160
Transcript Identifier
AT5G06160.1
Gene Type
Coding gene
Location
5 : 1862623-1866298 : negative

Family

Gene family
HOM03M003769
(24 genes in 16 species)
specific family

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Descriptions

Description
splicing factor-related
Curated Summary
Encodes a protein with similarity to pre-mRNA splicing factor SF3a60 that is involved in gametic cell fate determination. Loss of function results in the ectopic expression of egg cell makers suggesting a role in restriction of gametic cell fate. Expressed strongly in gametophytes and weakly in sporophytes.
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Identifiers

Identifier Name
aliasATROPOS
aliasATO

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045694IMPGene Ontologyregulation of embryo sac egg cell differentiation1
GO:0000741RCAGene Ontologykaryogamy1
GO:0006312RCAGene Ontologymitotic recombination1
GO:0006406RCAGene OntologymRNA export from nucleus1
GO:0009560RCAGene Ontologyembryo sac egg cell differentiation1
GO:0009561RCAGene Ontologymegagametogenesis1
GO:0009640RCAGene Ontologyphotomorphogenesis1
GO:0009793RCAGene Ontologyembryo development ending in seed dormancy1
GO:0009845RCAGene Ontologyseed germination1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010074RCAGene Ontologymaintenance of meristem identity1
GO:0010162RCAGene Ontologyseed dormancy process1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010388RCAGene Ontologycullin deneddylation1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0019915RCAGene Ontologylipid storage1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0050826RCAGene Ontologyresponse to freezing1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEAInterProzinc ion binding
GO:0003676IEAInterPronucleic acid binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISM, IEAGene Ontologynucleus1
GO:0005829IDAGene Ontologycytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR021966Splicing factor SF3a60 binding domain
IPR000690Zinc finger, C2H2-type matrin
IPR024598Domain of unknown function DUF3449

Mapman id Description
27.1.1RNA.processing.splicing
No SignalP domains detected for this gene.