Gene: AT5G06140 (Arabidopsis thaliana)

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Gene Identifier
AT5G06140
Transcript Identifier
AT5G06140.1
Gene Type
Coding gene
Location
5 : 1856212-1858752 : negative

Family

Gene family
HOM03M004497
(21 genes in 16 species)
specific family

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Descriptions

Description
sorting nexin 1
Curated Summary
Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.
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Identifiers

Identifier Name
aliassorting nexin 1
aliasARABIDOPSIS THALIANA SORTING NEXIN 1
aliasSNX1
aliasATSNX1
uniprotQ9FG38

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0035556ISSGene Ontologyintracellular signal transduction1
GO:0008333TAS, ISSUniProtendosome to lysosome transport1 2 3 4 5 6 7 8 9 10 11
GO:0009958IMPUniProtpositive gravitropism1 2 3 4 5 6 7 8 9 10
GO:0010252IDAUniProtauxin homeostasis1 2 3 4 5 6 7 8 9 10
GO:0048364IMPUniProtroot development1 2 3 4 5 6 7 8 9 10
GO:0006896IDAUniProtGolgi to vacuole transport1 2 3 4 5 6 7 8 9 10
GO:0006623IMP, RCA, UniProtprotein targeting to vacuole1 2 3 4 5 6 7 8 9 10 11
GO:0006511RCAGene Ontologyubiquitin-dependent protein catabolic process1
GO:0009853RCAGene Ontologyphotorespiration1
GO:0016197RCAGene Ontologyendosomal transport1
GO:0051788RCAGene Ontologyresponse to misfolded protein1
GO:0080129RCAGene Ontologyproteasome core complex assembly1
GO:0007154IEAUniProtcell communication1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0035091IEAUniProtphosphatidylinositol binding1 2 3 4 5 6 7 8 9

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507ISMGene Ontologychloroplast1
GO:0005771IDAUniProtmultivesicular body1 2 3 4 5 6 7 8 9 10
GO:0016020IDAGene Ontologymembrane1
GO:0030904IDA, ISS, UniProtretromer complex1 2 3 4 5 6 7 8 9 10 11
GO:0043231IDAGene Ontologyintracellular membrane-bounded organelle1
GO:0005768IDAGene Ontologyendosome1
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8 9 10
GO:0005794IEAUniProtGolgi apparatus1 2 3 4 5 6 7 8 9
GO:0031902IEAUniProtlate endosome membrane1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001683Phox homologous domain
IPR015404Vps5 C-terminal
IPR027267Arfaptin homology (AH) domain/BAR domain

Mapman id Description
29.3.4.3protein.targeting.secretory pathway.vacuole
No SignalP domains detected for this gene.