PLAZA 3.0 Monocots gene overview : AT5G06140

Gene: AT5G06140 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G06140
Transcript Identifier: AT5G06140.1
Gene Type: Coding gene
Location: 5 : 1856212-1858752 : negative

Family

Gene family: HOM03M004497
(21 genes in 16 species)
specific family

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Descriptions

Description: sorting nexin 1

Curated Summary: Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1.

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Identifiers

Identifier	Name
alias	sorting nexin 1
alias	ARABIDOPSIS THALIANA SORTING NEXIN 1
alias	SNX1
alias	ATSNX1
uniprot	Q9FG38

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0035556	ISS	Gene Ontology	intracellular signal transduction	1
GO:0008333	TAS, ISS	UniProt	endosome to lysosome transport	1 2 3 4 5 6 7 8 9 10 11
GO:0009958	IMP	UniProt	positive gravitropism	1 2 3 4 5 6 7 8 9 10
GO:0010252	IDA	UniProt	auxin homeostasis	1 2 3 4 5 6 7 8 9 10
GO:0048364	IMP	UniProt	root development	1 2 3 4 5 6 7 8 9 10
GO:0006896	IDA	UniProt	Golgi to vacuole transport	1 2 3 4 5 6 7 8 9 10
GO:0006623	IMP, RCA,	UniProt	protein targeting to vacuole	1 2 3 4 5 6 7 8 9 10 11
GO:0006511	RCA	Gene Ontology	ubiquitin-dependent protein catabolic process	1
GO:0009853	RCA	Gene Ontology	photorespiration	1
GO:0016197	RCA	Gene Ontology	endosomal transport	1
GO:0051788	RCA	Gene Ontology	response to misfolded protein	1
GO:0080129	RCA	Gene Ontology	proteasome core complex assembly	1
GO:0007154	IEA	UniProt	cell communication	1 2 3 4 5 6 7 8 9

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IPI, IEA	Gene Ontology	protein binding	1
GO:0035091	IEA	UniProt	phosphatidylinositol binding	1 2 3 4 5 6 7 8 9

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISM	Gene Ontology	chloroplast	1
GO:0005771	IDA	UniProt	multivesicular body	1 2 3 4 5 6 7 8 9 10
GO:0016020	IDA	Gene Ontology	membrane	1
GO:0030904	IDA, ISS,	UniProt	retromer complex	1 2 3 4 5 6 7 8 9 10 11
GO:0043231	IDA	Gene Ontology	intracellular membrane-bounded organelle	1
GO:0005768	IDA	Gene Ontology	endosome	1
GO:0005829	IDA	UniProt	cytosol	1 2 3 4 5 6 7 8 9 10
GO:0005794	IEA	UniProt	Golgi apparatus	1 2 3 4 5 6 7 8 9
GO:0031902	IEA	UniProt	late endosome membrane	1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001683	Phox homologous domain
IPR015404	Vps5 C-terminal
IPR027267	Arfaptin homology (AH) domain/BAR domain

Mapman id	Description
29.3.4.3	protein.targeting.secretory pathway.vacuole

No SignalP domains detected for this gene.