Gene: AT5G06100 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G06100
Transcript Identifier
AT5G06100.2
Gene Type
Coding gene
Location
5 : 1838555-1840386 : positive

Family

Gene family
HOM03M000013
(1897 genes in 16 species)
specific family

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Descriptions

Description
myb domain protein 33
Curated Summary
Encodes a member of the myb family of transcription factors (MYB33), contains Pfam profile: PF00249 myb DNA-binding domain. Double mutants with MYB65 are male sterile- anthers are small, pollen development is defective. Spatial expression appears to be under the control of miR159, contains a target site for this micro RNA. When the target site is mutated , expression is detected in leaves, roots, anther filament, pistil. The expression of a translational fusion is specific to anther locules in contrast to constructs lacking the miR159 target site. Phenotype is conditional and can be restored by lower temperature or higher light intensity.
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Identifiers

Identifier Name
aliasmyb domain protein 33
aliasATMYB33
aliasMYB33

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISSGene Ontologyregulation of transcription, DNA-dependent1
GO:0009740RCA, TASGene Ontologygibberellic acid mediated signaling pathway1 2
GO:0048235IGIGene Ontologypollen sperm cell differentiation1
GO:0009789IMPGene Ontologypositive regulation of abscisic acid-activated signaling pathway1
GO:0043068IMPGene Ontologypositive regulation of programmed cell death1
GO:0045893IMPGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0045926IMPGene Ontologynegative regulation of growth1
GO:0009686RCAGene Ontologygibberellin biosynthetic process1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700ISS, TASGene Ontologysequence-specific DNA binding transcription factor activity1 2
GO:0003682IEAInterProchromatin binding
GO:0005488IEAPLAZA HomologybindingHOM03M000013
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03M000013
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03M000013
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03M000013

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISM, TASGene Ontologynucleus1 2

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001005SANT/Myb domain
IPR017930Myb domain
IPR009057Homeodomain-like

Mapman id Description
27.3.25RNA.regulation of transcription.MYB domain transcription factor family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMYB
PlantTFDBMYB